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[182510_at]

Description T07G12.3 /REP_DB=WormBase Gene ID /WP=CE13391 /TR=O18062 /GB=CAB05275.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 14
(-2.2)
A 		69.8
(3)
P 		56.9
(1.8)
P 		5.2
(-3)
A 		65
B 15.4
(-3)
A 		56.8
(3)
P 		43.1
(1)
P 		36.5
(0.1)
A 		41
C 3.2
(-3)
A 		45.9
(0.2)
P 		82.9
(3)
A 		31.4
(-0.9)
A 		80
avr 10.9
(-3) 		57.5
(2.6) 		61
(3) 		24.4
(-1.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 17.4
(-0.3)
A 		33.4
(3)
A 		19.4
(0.1)
A 		22.2
(0.7)
A 		13.2
(-1.2)
A 		4.7
(-3)
A 		29
B 14.6
(-1.8)
A 		42.7
(3)
P 		41.9
(2.9)
P 		28.4
(0.5)
A 		24.8
(-0.1)
P 		7.9
(-3)
A 		35
C 19.2
(-1.1)
A 		46.6
(3)
P 		34.9
(1.2)
A 		7.1
(-2.9)
A 		11.7
(-2.2)
A 		6.5
(-3)
A 		40
avr 17.1
(-1.1) 		40.9
(3) 		32.1
(1.5) 		19.2
(-0.8) 		16.6
(-1.2) 		6.4
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 5.1
(-1.2)
A 		15.2
(3)
P 		14.9
(2.9)
P 		0.8
(-3)
A 		14
B 4.9
(-3)
A 		14
(3)
P 		10
(0.4)
P 		7.8
(-1.1)
A 		9
C 1.1
(-3)
A 		13.2
(-0.4)
P 		28.9
(3)
A 		5.3
(-2.1)
A 		28
avr 3.7
(-3) 		14.1
(1.4) 		17.9
(3) 		4.6
(-2.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-1.8)
A 		11.9
(3)
A 		4.2
(-1.3)
A 		5.6
(-0.5)
A 		4
(-1.4)
A 		1.1
(-3)
A 		11
B 5.1
(-1.8)
A 		14.2
(3)
P 		10.2
(0.9)
P 		7.5
(-0.6)
A 		10.1
(0.8)
P 		2.9
(-3)
A 		11
C 7.1
(-0.3)
A 		14.2
(3)
P 		8.9
(0.5)
A 		1.4
(-3)
A 		3.8
(-1.9)
A 		2.2
(-2.6)
A 		13
avr 5.1
(-1.4) 		13.4
(3) 		7.8
(0) 		4.8
(-1.6) 		6
(-0.9) 		2.1
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8780
Sequence Type Exemplar sequence
Representative Public ID T07G12.3 NCBI
Target Description T07G12.3 /REP_DB=WormBase Gene ID /WP=CE13391 /TR=O18062 /GB=CAB05275.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069544 NCBI Caenorhabditis elegans T07G12.3 (T07G12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000026268 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10530724:10536402:1 11/11 None
T07G12.3 ENSEMBL cdna:known chromosome:CEL140:IV:10533889:10536402:1 gene:T07G12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026256 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10533894-10536408(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07G12.3
Entrez Gene 188242 Entrez gene
SwissProt O18062 EMBL-EBI
WormBase CE13391 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05275 Hypothetical protein T07G12.3 [Caenorhabditis elegans] ref|NP_501945.1| T07G12.3 [Caenorhabditis elegans] 0.0
blast CAB05274 Hypothetical protein T07G12.2 [Caenorhabditis elegans] ref|NP_501944.2| T07G12.2 [Caenorhabditis elegans] 0.0
blast CAB05276 Hypothetical protein T07G12.4 [Caenorhabditis elegans] ref|NP_501946.1| T07G12.4 [Caenorhabditis elegans] 0.0
blast CAE65713 Hypothetical protein CBG10792 [Caenorhabditis briggsae] 1.0E-150
blast CAE56376 Hypothetical protein CBG24051 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501945.1 1 13-35
T07G12.3 1 13-35
GENEFINDER00000026268 12 20-42,63-85,120-142,147-166,176-195,216-238,322-344,365-384,388-407,420-437,452-474,545-564
Sequence
Target Sequence 
>C. ELEGANS:182510_AT
aactcattttgacgtcagagcaactttattggatattttgaagtttcaaccaacgtctaa
attcatggatcgtcaacagaaaaatattcctgatgaaaaaggacattcgttaatacgaaa
acaaccagattttccaagaacttgtgcaactttgccaattccacagcaatggtgtatttg
tcaggttgataagtttgaaattcataatgaaactttaaaaaatcacttgggtgaaaaatt
attaaaccacgttcatcggaagttgaagaagttaaacgtatcggaaatttgtgaaacatt
tcggcttagcaaggtgacaagtttgattgaatatggatatgttcgaacaatgaggacata
caaaatctctgtagaaactacaatatcaagttacgcccactttgaaacatttgtgactta
tgatatcgaaacagatattgcgaaattcgaaaaagtgactcgattggataattatgcgat
gacaacagactgtacaaagcctatacgacaaagtcctttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCATTTTGACGTCAGAGCAACT 117 141 1353 Antisense
TGAAGTTTCAACCAACGTCTAAATT 278 575 1391 Antisense
GTCTAAATTCATGGATCGTCAACAG 660 469 1407 Antisense
CAACCAGATTTTCCAAGAACTTGTG 334 187 1474 Antisense
GTGCAACTTTGCCAATTCCACAGCA 145 481 1496 Antisense
ATTAAACCACGTTCATCGGAAGTTG 357 1 1593 Antisense
GTGAAACATTTCGGCTTAGCAAGGT 106 483 1643 Antisense
ACTACAATATCAAGTTACGCCCACT 123 101 1729 Antisense
GTTACGCCCACTTTGAAACATTTGT 212 447 1742 Antisense
GACAACAGACTGTACAAAGCCTATA 642 365 1833 Antisense
AAGCCTATACGACAAAGTCCTTTGT 282 149 1849 Antisense
Sequence Source Affymetrix Proprietary Database