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[182509_at]

Description F40F11.2 /REP_DB=WormBase Gene ID /WP=CE05861 /TR=Q20207 /GB=CAA97793.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 38      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 586
(3)
P 		327.7
(-0.6)
A 		155.3
(-3)
A 		338.2
(-0.5)
P 		431
B 627.9
(3)
P 		235.5
(-2)
A 		159.7
(-3)
M 		312.1
(-1)
P 		468
C 482.7
(3)
P 		282.1
(-1.8)
A 		233.5
(-3)
P 		314
(-1.1)
P 		249
avr 565.5
(3) 		281.8
(-1.4) 		182.8
(-3) 		321.4
(-0.8) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 479.7
(1.4)
P 		548.9
(3)
P 		285
(-3)
P 		360.6
(-1.3)
P 		348
(-1.6)
P 		474.3
(1.3)
P 		264
B 467.2
(3)
P 		421
(2)
P 		197.1
(-3)
P 		325.7
(-0.1)
P 		305.3
(-0.6)
P 		257.8
(-1.7)
P 		270
C 615.4
(3)
P 		457.2
(0)
P 		415.3
(-0.7)
P 		384.7
(-1.3)
P 		294.3
(-3)
P 		342.8
(-2.1)
P 		321
avr 520.8
(3) 		475.7
(1.8) 		299.1
(-3) 		357
(-1.4) 		315.9
(-2.5) 		358.3
(-1.4) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 213.3
(3)
P 		71.1
(-1.9)
A 		40.6
(-3)
A 		49.5
(-2.7)
P 		173
B 200.2
(3)
P 		58.2
(-2.2)
A 		37
(-3)
M 		66.5
(-1.9)
P 		163
C 159.8
(3)
P 		81.1
(-1.4)
A 		81.4
(-1.4)
P 		53
(-3)
P 		107
avr 191.1
(3) 		70.1
(-2.3) 		53
(-3) 		56.3
(-2.9) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 88.4
(-1.8)
P 		195.2
(3)
P 		62.1
(-3)
P 		91.5
(-1.7)
P 		105
(-1.1)
P 		115.5
(-0.6)
P 		133
B 162.6
(3)
P 		140.1
(1.8)
P 		47.9
(-3)
P 		86.3
(-1)
P 		124
(1)
P 		96.1
(-0.5)
P 		115
C 228.1
(3)
P 		139.5
(-0.5)
P 		105.7
(-1.9)
P 		77.4
(-3)
P 		95.2
(-2.3)
P 		114.8
(-1.5)
P 		151
avr 159.7
(3) 		158.3
(2.9) 		71.9
(-3) 		85.1
(-2.1) 		108.1
(-0.5) 		108.8
(-0.5) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9857
Sequence Type Exemplar sequence
Representative Public ID F40F11.2 NCBI
Target Description F40F11.2 /REP_DB=WormBase Gene ID /WP=CE05861 /TR=Q20207 /GB=CAA97793.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069784 NCBI Caenorhabditis elegans F40F11.2 (F40F11.2) mRNA, complete cds. 11/11 None
SNAP00000006486 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11594837:11601025:1 11/11 None
GENEFINDER00000006490 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11594780:11601025:1 11/11 None
F40F11.2 ENSEMBL cdna:known chromosome:CEL140:IV:11594295:11601831:1 gene:F40F11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11594787-11601031(+) 98.62 99.96
Public Domain and Genome References
Gene Title
Ensembl F40F11.2
Entrez Gene 178082 Entrez gene
SwissProt Q20207 EMBL-EBI
WormBase CE28557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97793 Hypothetical protein F40F11.2 [Caenorhabditis elegans] ref|NP_502185.1| F40F11.2 [Caenorhabditis elegans] 0.0
blast CAE62093 Hypothetical protein CBG06120 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182509_AT
cagtatccgcaaagcttccaacaggaaagacacctggtcgccccgtcgctctttcaactc
caagatcttcgcataagccaccacaagcagttgttgctccacgtccaaatttgattcgaa
ctgctccggttgtaccgaaaatcactgtcacaaatgcatcggagagcagtcttccttcta
aatctcatatcccaattgaagtgaaaccaaagttgtcttcacttcttccatgggtatcag
acaccgatgaaagccctgaacagaagcataaattgaagaaaacgatgccttcaattaatt
tattaaaagtgaaaacggaacctccggaagctgatgctgttacatcaaagcctgaatctc
ctcgtgcatcatcgtcgatgtcgttttttgaagacgcatttctacgatccccaaaacgat
cgaatgagccactgcctgttgtcgaattttctgacgacgaggagaacgatttggctcatt
cgacattcagtcatgccactgatcatttgctagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTATCCGCAAAGCTTCCAACAGG 187 205 4214 Antisense
GTTGCTCCACGTCCAAATTTGATTC 26 439 4306 Antisense
TTCGAACTGCTCCGGTTGTACCGAA 54 685 4328 Antisense
GAGCAGTCTTCCTTCTAAATCTCAT 454 389 4377 Antisense
TCTTCACTTCTTCCATGGGTATCAG 74 617 4429 Antisense
GAACCTCCGGAAGCTGATGCTGTTA 325 345 4531 Antisense
TCCTCGTGCATCATCGTCGATGTCG 39 593 4572 Antisense
TTGAAGACGCATTTCTACGATCCCC 169 705 4601 Antisense
CCACTGCCTGTTGTCGAATTTTCTG 332 273 4642 Antisense
GATTTGGCTCATTCGACATTCAGTC 284 427 4681 Antisense
GTCATGCCACTGATCATTTGCTAGG 410 467 4703 Antisense
Sequence Source Affymetrix Proprietary Database