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[182507_at]

Description F38E9.6 /REP_DB=WormBase Gene ID /WP=CE07202 /TR=Q20172 /GB=AAA93344.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_total > 02      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 100.2
(-2.9)
P 		113.2
(-2.6)
P 		96.8
(-3)
P 		317.5
(3)
P 		221
B 65.4
(-2.2)
P 		98.8
(0)
P 		54.1
(-3)
P 		143
(3)
P 		89
C 74.2
(-3)
P 		111.3
(-1.5)
P 		89
(-2.4)
P 		223.6
(3)
P 		149
avr 79.9
(-3) 		107.8
(-1.9) 		80
(-3) 		228
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 56.9
(-3)
A 		103.7
(2.6)
P 		107
(3)
P 		87.8
(0.7)
P 		58.1
(-2.9)
P 		57.8
(-2.9)
P 		50
B 88.9
(2.4)
P 		89.9
(2.5)
P 		48.9
(-3)
P 		93.7
(3)
P 		82.5
(1.5)
P 		58.1
(-1.8)
P 		45
C 117.6
(2.9)
P 		98.3
(1.4)
P 		41.8
(-3)
A 		119.5
(3)
P 		106.1
(2)
M 		50.1
(-2.4)
A 		78
avr 87.8
(1.3) 		97.3
(2.6) 		65.9
(-1.6) 		100.3
(3) 		82.2
(0.6) 		55.3
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36.5
(0.3)
P 		24.6
(-3)
P 		25.3
(-2.8)
P 		46.5
(3)
P 		22
B 20.9
(-0.2)
P 		24.4
(1)
P 		12.5
(-3)
P 		30.5
(3)
P 		18
C 24.6
(-3)
P 		32
(0.4)
P 		31
(-0.1)
P 		37.7
(3)
P 		13
avr 27.3
(-1.3) 		27
(-1.4) 		22.9
(-3) 		38.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 10.5
(-3)
A 		36.9
(3)
P 		23.3
(-0.1)
P 		22.3
(-0.3)
P 		17.5
(-1.4)
P 		14.1
(-2.2)
P 		26
B 30.9
(2.3)
P 		29.9
(2)
P 		11.9
(-3)
P 		24.8
(0.6)
P 		33.5
(3)
P 		21.7
(-0.3)
P 		22
C 43.6
(3)
P 		30
(0.5)
P 		10.6
(-3)
A 		24
(-0.6)
P 		34.3
(1.3)
M 		16.8
(-1.9)
A 		33
avr 28.3
(1.6) 		32.3
(3) 		15.3
(-3) 		23.7
(-0) 		28.4
(1.6) 		17.5
(-2.2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17378
Sequence Type Exemplar sequence
Representative Public ID F38E9.6 NCBI
Target Description F38E9.6 /REP_DB=WormBase Gene ID /WP=CE07202 /TR=Q20172 /GB=AAA93344.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078267 NCBI Caenorhabditis elegans F38E9.6 (F38E9.6) mRNA, complete cds. 11/11 None
F38E9.6 ENSEMBL cdna:known chromosome:CEL140:X:16439077:16441004:1 gene:F38E9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030343 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16439076-16441004(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E9.6
Entrez Gene 185470 Entrez gene
SwissProt Q20172 EMBL-EBI
WormBase CE07202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93344 Hypothetical protein F38E9.6 [Caenorhabditis elegans] ref|NP_510668.1| F38E9.6 [Caenorhabditis elegans] 1.0E-101
blast CAE69969 Hypothetical protein CBG16365 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:182507_AT
acttttccaatgcttatatcactcaaaaagctattttggctatcagtatggaccacacaa
atatttttttttccaaacttttcgaaaaaagttgcgaatttcaacaaaaaaatcaagatt
ttttactcagatatttggaatttagagaattgaatttttttttttggagtagtactttcc
agccatccttcaatgatggaaactcgctagagggattcggagagtacgccgattacctac
catcaaagagggcattttcgttccaagcagcacgtggcaagaagagtatgatgggagaga
aaagcgtaccttcatatatctttaatgaaaaccaaagactgaagagaggcgtggcccgga
atatgtatacaacaaaaaacagggaaaatacaatgaaatttaaacttcttagtatcaaac
ggagaaaaaaaaccggagtcactacagtgcgtccaacttctatagcactccattccggtt
tggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTTCCAATGCTTATATCACTCA 24 103 20 Antisense
TTTGGCTATCAGTATGGACCACACA 624 665 54 Antisense
TGGAGTAGTACTTTCCAGCCATCCT 173 549 184 Antisense
GGAAACTCGCTAGAGGGATTCGGAG 688 525 217 Antisense
TACGCCGATTACCTACCATCAAAGA 298 649 244 Antisense
CAAAGAGGGCATTTTCGTTCCAAGC 48 189 263 Antisense
TTCGTTCCAAGCAGCACGTGGCAAG 379 695 276 Antisense
AAGCGTACCTTCATATATCTTTAAT 419 149 321 Antisense
GAGGCGTGGCCCGGAATATGTATAC 95 405 365 Antisense
AACCGGAGTCACTACAGTGCGTCCA 412 145 450 Antisense
TATAGCACTCCATTCCGGTTTGGGA 552 659 480 Antisense
Sequence Source Affymetrix Proprietary Database