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[182506_at]

Description F58G11.4 /REP_DB=WormBase Gene ID /WP=CE11406 /TR=Q9XVL9 /GB=CAB03151.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 74      4grp_total > 04      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 188.6
(-2.3)
P 		144
(-3)
P 		170.7
(-2.6)
P 		510.4
(3)
P 		366
B 298.9
(0.1)
P 		155.3
(-2.8)
P 		147.1
(-3)
P 		445.2
(3)
P 		298
C 277.8
(-0.9)
P 		199.2
(-2.2)
P 		148
(-3)
P 		525
(3)
P 		377
avr 255.1
(-1.2) 		166.2
(-2.8) 		155.3
(-3) 		493.5
(3) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 183
(2.7)
P 		185.7
(3)
P 		147.7
(-0.9)
P 		159.2
(0.3)
P 		127.8
(-3)
P 		143.2
(-1.4)
P 		58
B 135.6
(-3)
P 		183.6
(3)
P 		149.5
(-1.3)
P 		160.5
(0.1)
P 		136.7
(-2.9)
P 		145.9
(-1.7)
P 		48
C 82.1
(-3)
P 		132.4
(-0.2)
P 		151.3
(0.8)
P 		186.5
(2.8)
P 		122.1
(-0.8)
P 		190.1
(3)
P 		108
avr 133.6
(-2.3) 		167.2
(2.8) 		149.5
(0.1) 		168.7
(3) 		128.9
(-3) 		159.7
(1.6) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 68.7
(2.2)
P 		31.3
(-3)
P 		44.6
(-1.2)
P 		74.7
(3)
P 		43
B 95.3
(3)
P 		38.3
(-2.6)
P 		34.1
(-3)
P 		94.9
(3)
P 		61
C 91.9
(3)
P 		57.3
(-2.2)
P 		51.6
(-3)
P 		88.5
(2.5)
P 		40
avr 85.3
(2.9) 		42.3
(-3) 		43.4
(-2.8) 		86
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 33.7
(-2.7)
P 		66
(3)
P 		32.2
(-3)
P 		40.4
(-1.5)
P 		38.6
(-1.9)
P 		34.9
(-2.5)
P 		34
B 47.2
(-0.4)
P 		61.1
(3)
P 		36.3
(-3)
P 		42.5
(-1.5)
P 		55.5
(1.6)
P 		54.4
(1.4)
P 		25
C 30.4
(-3)
P 		40.4
(-1.2)
P 		38.5
(-1.5)
P 		37.5
(-1.7)
P 		39.5
(-1.4)
P 		63.6
(3)
P 		33
avr 37.1
(-2.6) 		55.8
(3) 		35.7
(-3) 		40.1
(-1.7) 		44.5
(-0.4) 		51
(1.6) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13575
Sequence Type Exemplar sequence
Representative Public ID F58G11.4 NCBI
Target Description F58G11.4 /REP_DB=WormBase Gene ID /WP=CE11406 /TR=Q9XVL9 /GB=CAB03151.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073984 NCBI Caenorhabditis elegans F58G11.4 (F58G11.4) mRNA, complete cds. 11/11 None
SNAP00000001242 ENSEMBL cdna:SNAP chromosome:CEL140:V:13675193:13678506:1 11/11 None
GENEFINDER00000001251 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13675193:13678506:1 11/11 None
F58G11.4 ENSEMBL cdna:known chromosome:CEL140:V:13675193:13678506:1 gene:F58G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13675192-13678506(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G11.4
Entrez Gene 186546 Entrez gene
SwissProt Q9XVL9 EMBL-EBI
WormBase CE11406 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03151 Hypothetical protein F58G11.4 [Caenorhabditis elegans] ref|NP_506385.1| F58G11.4 [Caenorhabditis elegans] 0.0
blast CAE66265 Hypothetical protein CBG11509 [Caenorhabditis briggsae] 0.0
blast CAA94848 Hypothetical protein F57A8.7 [Caenorhabditis elegans] emb|CAA94837.1| Hypothetical protein F57A8.7 [Caenorhabditis elegans] ref|NP_505586.1| F57A8.7 [Caenorhabditis elegans] 6.0E-92
blast CAA94848 Hypothetical protein F57A8.7 [Caenorhabditis elegans] emb|CAA94837.1| Hypothetical protein F57A8.7 [Caenorhabditis elegans] ref|NP_505586.1| F57A8.7 [Caenorhabditis elegans] 1.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506385.1 11 12-34,49-71,83-101,105-127,147-169,184-206,260-277,287-309,322-341,371-393,441-460
F58G11.4 11 12-34,49-71,83-101,105-127,147-169,184-206,260-277,287-309,322-341,371-393,441-460
SNAP00000001242 11 12-34,49-71,83-101,105-127,147-169,184-206,247-264,274-296,309-328,358-380,428-447
GENEFINDER00000001251 11 12-34,49-71,83-101,105-127,147-169,184-206,260-277,287-309,322-341,371-393,441-460
Sequence
Target Sequence 
>C. ELEGANS:182506_AT
gattctgcagtcggtacaatgtccattattttcttcatcgccggagtcttcgcactatct
ctctacagtacttttgtcttcacggatgttgctcgaaaattgaatattggaaaagtgaat
acaattagtttgataatatttatcatatatgttctaacaacatatcaatggccgtatatt
ccaacgaatgtagttgtgaatacagatggaactcacggaggatgtgattattcattatat
tcatggtgtttaggacttccaaaaacatctcaagcgttcttctacattggatatattata
gcttttggtggttgtgtcccatttataaatgttggagatgccacgctttattcaaaacta
ttcaatccagttggccaagcattggagcaaagtctctatgacgtttcccaagtttttgcg
agagttgtagctcctgttctttgcacagcaatatacgcatcatttggtcctcaaagagtt
tgggagcttttattcgcccagttagttgtcgtcactgctctctggatagcttttgcccat
cgaatgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTGCAGTCGGTACAATGTCCA 552 431 856 Antisense
GCACTATCTCTCTACAGTACTTTTG 53 317 907 Antisense
GTACTTTTGTCTTCACGGATGTTGC 103 461 923 Antisense
AACATCTCAAGCGTTCTTCTACATT 46 139 1119 Antisense
AGCTTTTGGTGGTTGTGTCCCATTT 313 79 1155 Antisense
GCAAAGTCTCTATGACGTTTCCCAA 104 319 1242 Antisense
GAGAGTTGTAGCTCCTGTTCTTTGC 519 395 1275 Antisense
ATATACGCATCATTTGGTCCTCAAA 426 19 1306 Antisense
TATTCGCCCAGTTAGTTGTCGTCAC 37 665 1346 Antisense
GTCACTGCTCTCTGGATAGCTTTTG 574 465 1366 Antisense
ATAGCTTTTGCCCATCGAATGATCC 66 21 1381 Antisense
Sequence Source Affymetrix Proprietary Database