[Home] | [Total List]

[182505_at]

Description K07D4.2 /REP_DB=WormBase Gene ID /WP=CE19526 /TR=O76578 /GB=AAC26286.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 5.9
(-2.9)
A 		11.3
(-2.4)
A 		4.3
(-3)
A 		78.9
(3)
A 		75
B 24.9
(2.7)
A 		15.7
(-0.1)
A 		26
(3)
A 		6.3
(-3)
A 		20
C 18.6
(-2.4)
A 		36.7
(-1.2)
A 		8.4
(-3)
A 		104.2
(3)
A 		96
avr 16.5
(-2.6) 		21.2
(-2) 		12.9
(-3) 		63.1
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 11.7
(-2.1)
A 		6.7
(-2.7)
A 		10.4
(-2.2)
A 		4.7
(-3)
A 		49.9
(3)
A 		8.3
(-2.5)
A 		45
B 15.3
(-0.8)
A 		33.3
(3)
A 		11
(-1.7)
A 		25.2
(1.3)
A 		9.1
(-2.1)
A 		4.9
(-3)
A 		28
C 16.5
(-0.6)
A 		18
(-0.2)
A 		11.5
(-1.8)
A 		15.1
(-0.9)
A 		31.8
(3)
A 		6.2
(-3)
A 		26
avr 14.5
(-1) 		19.3
(0.2) 		11
(-1.9) 		15
(-0.9) 		30.3
(3) 		6.5
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.1
(-2.4)
A 		2.5
(-2.2)
A 		1.1
(-3)
A 		11.5
(3)
A 		10
B 7.9
(3)
A 		3.9
(-0.6)
A 		6
(1.3)
A 		1.3
(-3)
A 		7
C 6.2
(-1.7)
A 		10.6
(0.1)
A 		2.9
(-3)
A 		17.6
(3)
A 		15
avr 5.4
(-1.1) 		5.7
(-0.9) 		3.3
(-3) 		10.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		2.4
(-2.5)
A 		2.3
(-2.5)
A 		1.2
(-3)
A 		15.1
(3)
A 		2
(-2.7)
A 		14
B 5.3
(-0.7)
A 		11.1
(3)
A 		2.7
(-2.4)
A 		6.7
(0.2)
A 		3.7
(-1.8)
A 		1.8
(-3)
A 		9
C 6.1
(-0.1)
A 		5.5
(-0.5)
A 		2.9
(-2.4)
A 		3
(-2.3)
A 		10.3
(3)
A 		2.1
(-3)
A 		8
avr 4.5
(-1.1) 		6.3
(0.4) 		2.6
(-2.5) 		3.6
(-1.8) 		9.7
(3) 		2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4970
Sequence Type Exemplar sequence
Representative Public ID K07D4.2 NCBI
Target Description K07D4.2 /REP_DB=WormBase Gene ID /WP=CE19526 /TR=O76578 /GB=AAC26286.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062312 NCBI Caenorhabditis elegans K07D4.2 (K07D4.2) mRNA, complete cds. 11/11 None
SNAP00000021602 ENSEMBL cdna:SNAP chromosome:CEL140:II:4044765:4048699:-1 9/11 None
GENEFINDER00000021610 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4044765:4045814:-1 11/11 None
K07D4.2 ENSEMBL cdna:known chromosome:CEL140:II:4044765:4045490:-1 gene:K07D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4044763-4045489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07D4.2
Entrez Gene 187107 Entrez gene
SwissProt O76578 EMBL-EBI
WormBase CE19526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26286 Hypothetical protein K07D4.2 [Caenorhabditis elegans] ref|NP_494713.1| K07D4.2 [Caenorhabditis elegans] 1.0E-109
blast AAC26286 Hypothetical protein K07D4.2 [Caenorhabditis elegans] ref|NP_494713.1| K07D4.2 [Caenorhabditis elegans] 5.0E-80
blast CAB03177 Hypothetical protein F42H11.2 [Caenorhabditis elegans] emb|CAB05722.1| Hypothetical protein F42H11.2 [Caenorhabditis elegans] ref|NP_492539.1| LEM domain protein family member (lem-3) [Caenorhabditis elegans] 3.0E-16
blast CAE60173 Hypothetical protein CBG03727 [Caenorhabditis briggsae] 5.0E-16
blast CAE60173 Hypothetical protein CBG03727 [Caenorhabditis briggsae] 8.0E-16
blast CAB03177 Hypothetical protein F42H11.2 [Caenorhabditis elegans] emb|CAB05722.1| Hypothetical protein F42H11.2 [Caenorhabditis elegans] ref|NP_492539.1| LEM domain protein family member (lem-3) [Caenorhabditis elegans] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182505_AT
tgagagttactgttacgttctaataaacccatacgttctggacaaagacgtgagggaagt
agatctggctacgttcctctcgtcaatattctacgtgggcaaaggaaaaggggaaagagc
aatggcctacttcaaggatgcttgcgggaacattcaaggaagccgcaagcttactacaat
tgaccaggcttggaacaaaaaaggatttgtttataaacacataatttggagaccaattat
cgaaaatctagcactcgccagggaagctgctatgatattttttttcaaaaatttggctgg
aaaatcgaactttactaacaaatacaacggcagtttcaaaggagagtcggcgttttggag
cagggaagagaaatgcaactacggcgtatacctgctagaaacaatacaccgttcaatcca
aaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAGTTACTGTTACGTTCTAATA 168 567 102 Antisense
AAGTAGATCTGGCTACGTTCCTCTC 506 157 158 Antisense
CGTTCCTCTCGTCAATATTCTACGT 704 247 173 Antisense
GGGGAAAGAGCAATGGCCTACTTCA 87 497 211 Antisense
GGCCTACTTCAAGGATGCTTGCGGG 454 543 225 Antisense
GCCGCAAGCTTACTACAATTGACCA 478 283 263 Antisense
ATCGAAAATCTAGCACTCGCCAGGG 702 35 340 Antisense
GCACTCGCCAGGGAAGCTGCTATGA 141 317 352 Antisense
GAGAGTCGGCGTTTTGGAGCAGGGA 428 395 443 Antisense
CAACTACGGCGTATACCTGCTAGAA 654 185 477 Antisense
AATACACCGTTCAATCCAAACCAAT 651 169 504 Antisense
Sequence Source Affymetrix Proprietary Database