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[182504_at]

Description R08E5.1 /REP_DB=WormBase Gene ID /WP=CE27431 /TR=O01594 /GB=AAB52275.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      4grp_high_8_8 > 37      6grp_total > 31      4grp_total > 33      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 52.5
(-3)
P 		70.5
(-0.7)
A 		67.4
(-1.1)
P 		100.1
(3)
A 		48
B 56.2
(-3)
A 		104.3
(3)
P 		102.4
(2.8)
P 		93.6
(1.7)
P 		48
C 91.9
(3)
P 		86.4
(0.6)
P 		78
(-3)
P 		80
(-2.1)
P 		14
avr 66.9
(-3) 		87.1
(2) 		82.6
(0.9) 		91.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 49.4
(-1.3)
P 		73.2
(1.1)
P 		92.5
(3)
P 		31.8
(-3)
A 		47.4
(-1.5)
P 		62.3
(0)
P 		61
B 78
(1.9)
P 		85.7
(3)
P 		59
(-0.8)
P 		72
(1)
P 		55.4
(-1.3)
P 		43.8
(-3)
A 		42
C 54.5
(-2.4)
A 		64.1
(-1.3)
P 		101.5
(3)
P 		84.6
(1.1)
P 		49
(-3)
A 		59
(-1.9)
P 		53
avr 60.6
(-1.2) 		74.3
(1.2) 		84.3
(3) 		62.8
(-0.8) 		50.6
(-3) 		55
(-2.2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.1
(3)
P 		15.3
(-2.2)
A 		17.6
(1)
P 		14.7
(-3)
A 		4
B 17.9
(-3)
A 		25.8
(3)
P 		23.7
(1.4)
P 		20
(-1.4)
P 		8
C 30.4
(3)
P 		24.8
(1)
P 		27.2
(1.9)
P 		13.5
(-3)
P 		17
avr 22.5
(2.7) 		22
(2.3) 		22.8
(3) 		16.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.1
(-2.7)
P 		26
(3)
P 		20.1
(1)
P 		8.1
(-3)
A 		14.3
(-0.9)
P 		15.2
(-0.6)
P 		18
B 27.1
(2.4)
P 		28.5
(3)
P 		14.3
(-3)
P 		19.1
(-1)
P 		22.5
(0.5)
P 		16.3
(-2.2)
A 		14
C 20.2
(-0.4)
A 		19.6
(-0.8)
P 		25.8
(3)
P 		17
(-2.3)
P 		15.9
(-3)
A 		19.8
(-0.6)
P 		10
avr 18.8
(-0.5) 		24.7
(3) 		20.1
(0.2) 		14.7
(-3) 		17.6
(-1.3) 		17.1
(-1.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14790
Sequence Type Exemplar sequence
Representative Public ID R08E5.1 NCBI
Target Description R08E5.1 /REP_DB=WormBase Gene ID /WP=CE27431 /TR=O01594 /GB=AAB52275.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071643 NCBI Caenorhabditis elegans R08E5.1 (R08E5.1) mRNA, complete cds. 11/11 None
SNAP00000044450 ENSEMBL cdna:SNAP chromosome:CEL140:V:3769714:3770893:-1 10/11 None
GENEFINDER00000044457 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3769714:3770893:-1 10/11 None
R08E5.1 ENSEMBL cdna:known chromosome:CEL140:V:3770117:3771293:-1 gene:R08E5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3770116-3770866(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08E5.1
Entrez Gene 178794 Entrez gene
SwissProt O01594 EMBL-EBI
WormBase CE27431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52275 Hypothetical protein R08E5.1 [Caenorhabditis elegans] ref|NP_504044.1| R08E5.1 [Caenorhabditis elegans] 1.0E-127
blast AAB52275 Hypothetical protein R08E5.1 [Caenorhabditis elegans] ref|NP_504044.1| R08E5.1 [Caenorhabditis elegans] 1.0E-117
blast AAB52277 Hypothetical protein R08E5.3 [Caenorhabditis elegans] ref|NP_504045.1| R08E5.3 [Caenorhabditis elegans] 1.0E-108
blast CAE65471 Hypothetical protein CBG10437 [Caenorhabditis briggsae] 1.0E-103
blast AAB52277 Hypothetical protein R08E5.3 [Caenorhabditis elegans] ref|NP_504045.1| R08E5.3 [Caenorhabditis elegans] 6.0E-94
Sequence
Target Sequence 
>C. ELEGANS:182504_AT
gacctgctaaccaatagtcttgcactagtgatgattggctccacgccaactcttctggaa
ccatttgaaaaactcattgaatgcttcaaaaaggatgggccgtacggtctcgattattcg
gagatctcaaaatttcaatattttatgggaaaaatgagtcaggcacttcacgagaagcat
gtgataactgatatgcttccggacatcggtcacggagttgtcgagaagcttgaaaccggt
ggaatgcgggttctggacgtcgggtgtggtggtggatcccattcttcgttgctcgccgag
caatacccaaaagcacattttgtcgggctagaaattggagaagatgccattcggcaggcg
aaacaacgaaaaactaaatcaggagcggctttcaacaatctcgaatttatacaatgcgac
gctggaaaaatgccagaaatttggacggattccttcgatttggtccttatttttgatgcg
tgccacgatcaatgcaggcctgacctagtgtgtatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTGCTAACCAATAGTCTTGCAC 341 383 82 Antisense
TGATGATTGGCTCCACGCCAACTCT 392 567 110 Antisense
GGGCCGTACGGTCTCGATTATTCGG 189 1 178 Antisense
ATGAGTCAGGCACTTCACGAGAAGC 384 45 235 Antisense
TGTGATAACTGATATGCTTCCGGAC 552 555 261 Antisense
GCTTCCGGACATCGGTCACGGAGTT 338 305 276 Antisense
ACCGGTGGAATGCGGGTTCTGGACG 229 85 316 Antisense
GGATTCCTTCGATTTGGTCCTTATT 532 507 528 Antisense
GGTCCTTATTTTTGATGCGTGCCAC 14 503 543 Antisense
TGCGTGCCACGATCAATGCAGGCCT 537 581 558 Antisense
GCAGGCCTGACCTAGTGTGTATCTC 347 311 575 Antisense
Sequence Source Affymetrix Proprietary Database