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[182503_s_at]

Description C06A5.6 /REP_DB=WormBase Gene ID /WP=CE07953 /TR=O01477 /GB=AAB52439.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 19.1
(-3)
A 		89.7
(1.8)
A 		107.8
(3)
A 		94
(2.1)
A 		89
B 33.3
(-2.3)
A 		26.6
(-3)
A 		80.6
(3)
A 		68
(1.6)
P 		54
C 37.6
(-2.8)
A 		35
(-3)
A 		67.8
(-0.8)
A 		123.6
(3)
M 		89
avr 30
(-3) 		50.4
(-1.1) 		85.4
(2.1) 		95.2
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 7
(-3)
A 		56.8
(-2.3)
A 		74.4
(-2)
A 		124.8
(-1.3)
A 		210
(-0.1)
P 		420
(3)
P 		413
B 31.6
(-2.9)
A 		24.3
(-3)
A 		43.8
(-2.6)
A 		112.2
(-1.2)
P 		222
(0.9)
P 		325.6
(3)
P 		301
C 28.1
(-3)
A 		46.7
(-2.6)
A 		55.2
(-2.4)
A 		137.1
(-0.5)
P 		234.7
(1.7)
P 		293.9
(3)
P 		266
avr 22.2
(-3) 		42.6
(-2.6) 		57.8
(-2.3) 		124.7
(-1.1) 		222.2
(0.7) 		346.5
(3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7
(-3)
A 		19.5
(0.5)
A 		28.2
(3)
A 		13.8
(-1.1)
A 		21
B 10.6
(-1)
A 		6.6
(-3)
A 		18.7
(3)
A 		14.5
(0.9)
P 		12
C 12.4
(-2)
A 		10.1
(-3)
A 		23.6
(3)
A 		20.8
(1.8)
M 		14
avr 10
(-3) 		12.1
(-2.1) 		23.5
(3) 		16.4
(-0.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 1.3
(-3)
A 		20.2
(-1.9)
A 		16.2
(-2.1)
A 		31.6
(-1.2)
A 		63.4
(0.7)
P 		102.3
(3)
P 		101
B 11
(-2.8)
A 		8.1
(-3)
A 		10.6
(-2.9)
A 		29.7
(-1.9)
P 		90.2
(1.3)
P 		121.4
(3)
P 		113
C 10.4
(-3)
A 		14.2
(-2.7)
A 		14.1
(-2.7)
A 		27.6
(-1.8)
P 		75.9
(1.5)
P 		98.4
(3)
P 		88
avr 7.6
(-3) 		14.2
(-2.6) 		13.6
(-2.6) 		29.6
(-1.7) 		76.5
(1.1) 		107.4
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182503_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.579
Sequence Type Exemplar sequence
Representative Public ID C06A5.6 NCBI
Target Description C06A5.6 /REP_DB=WormBase Gene ID /WP=CE07953 /TR=O01477 /GB=AAB52439.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059329 NCBI Caenorhabditis elegans C06A5.6 (C06A5.6) mRNA, complete cds. 11/11 None
SNAP00000012785 ENSEMBL cdna:SNAP chromosome:CEL140:I:5991481:5993994:-1 11/11 None
GENEFINDER00000012798 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5991481:5993994:-1 11/11 None
C06A5.6 ENSEMBL cdna:known chromosome:CEL140:I:5991365:5993994:-1 gene:C06A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5991480-5993994(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A5.6
Entrez Gene 172273 Entrez gene
SwissProt O01477 EMBL-EBI
WormBase CE07953 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52439 Hypothetical protein C06A5.6 [Caenorhabditis elegans] ref|NP_491730.1| C06A5.6 [Caenorhabditis elegans] 0.0
blast CAA94860 Hypothetical protein ZK856.12 [Caenorhabditis elegans] ref|NP_505628.1| ZK856.12 [Caenorhabditis elegans] 3.0E-90
blast CAE60328 Hypothetical protein CBG03920 [Caenorhabditis briggsae] 1.0E-39
Sequence
Target Sequence 
>C. ELEGANS:182503_S_AT
atcatacagttcttccatcagtggctccaataataagaaatgcaaccggtcattcccaca
tatttggccgtcaaattccatcaccagcttttagaagagagtcactgagttcaggaaatt
caattcaagtcgcaacatttgctgcgacaactggaccgtgcggatcgaacacatctagac
caactgctcagaacacggcgaactcgagcataaatcaggatatgagcatctcgaattctt
cgactaacgctcgattgataacaattgctcaagacaatttgaacgacactgaaaactggc
caaactctgaaagagagcaatccgcaactgaaatggagagcggagcagaagcaacaacaa
attctgctgttgatgagttcgcgcaagtatccgatgatatgaagggcctggcagacagta
tgatcaactttttgcgacttacggccaactcaaataatcaagatgccttcaaagccaaca
ttttcgccatggagctcatctccactaagattccgaaccagctcaccaaacgcttcttta
cgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATACAGTTCTTCCATCAGTGGC 64 31 1502 Antisense
AAGAAATGCAACCGGTCATTCCCAC 174 153 1536 Antisense
TCATTCCCACATATTTGGCCGTCAA 131 617 1551 Antisense
ACATTTGCTGCGACAACTGGACCGT 686 103 1636 Antisense
TGGACCGTGCGGATCGAACACATCT 28 549 1653 Antisense
CGAACACATCTAGACCAACTGCTCA 295 253 1667 Antisense
GAATTCTTCGACTAACGCTCGATTG 23 325 1734 Antisense
TTTTTGCGACTTACGGCCAACTCAA 53 671 1930 Antisense
AAGCCAACATTTTCGCCATGGAGCT 259 149 1973 Antisense
CTCCACTAAGATTCCGAACCAGCTC 100 233 2001 Antisense
AGCTCACCAAACGCTTCTTTACGTT 485 79 2021 Antisense
Sequence Source Affymetrix Proprietary Database