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[182502_at]

Description F18E9.4 /REP_DB=WormBase Gene ID /WP=CE02661 /TR=Q19567 /GB=AAA68810.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 82      4grp_total > 42      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 85.5
(-3)
P 		219.1
(3)
P 		206.5
(2.4)
P 		126.8
(-1.1)
P 		134
B 105.2
(-2.4)
P 		264.4
(3)
P 		146
(-1)
P 		87.4
(-3)
P 		177
C 107.7
(-3)
P 		180.9
(1.7)
P 		171.4
(1.1)
P 		201
(3)
P 		93
avr 99.5
(-3) 		221.5
(3) 		174.6
(0.7) 		138.4
(-1.1) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 143.3
(-0.5)
P 		178.9
(0.9)
P 		164.9
(0.4)
P 		231.5
(3)
P 		213.9
(2.3)
P 		79.6
(-3)
P 		152
B 198
(1.7)
P 		231.6
(3)
P 		200.8
(1.8)
P 		214.7
(2.3)
P 		198.7
(1.7)
P 		80.6
(-3)
P 		151
C 133.6
(-1.3)
P 		166.4
(0.2)
P 		135
(-1.2)
P 		180.1
(0.8)
P 		230.2
(3)
P 		94.5
(-3)
P 		136
avr 158.3
(0.4) 		192.3
(2) 		166.9
(0.8) 		208.8
(2.7) 		214.3
(3) 		84.9
(-3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 31.1
(-0.9)
P 		47.6
(1.9)
P 		54
(3)
P 		18.6
(-3)
P 		35
B 33.6
(-1.1)
P 		65.3
(3)
P 		33.8
(-1)
P 		18.6
(-3)
P 		47
C 35.7
(-2.6)
P 		52
(1.2)
P 		59.8
(3)
P 		33.9
(-3)
P 		26
avr 33.5
(-1.1) 		55
(3) 		49.2
(1.9) 		23.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 26.4
(-2.1)
P 		63.6
(2.9)
P 		35.9
(-0.8)
P 		58.7
(2.2)
P 		64.5
(3)
P 		19.4
(-3)
P 		45
B 68.9
(1.6)
P 		77.1
(2.6)
P 		48.8
(-0.8)
P 		56.9
(0.2)
P 		80.7
(3)
P 		30.1
(-3)
P 		51
C 49.5
(-0.5)
P 		50.8
(-0.3)
P 		34.4
(-2.6)
P 		36.2
(-2.4)
P 		74.5
(3)
P 		31.6
(-3)
P 		43
avr 48.3
(-0.2) 		63.8
(1.8) 		39.7
(-1.4) 		50.6
(0.1) 		73.2
(3) 		27
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16149
Sequence Type Exemplar sequence
Representative Public ID F18E9.4 NCBI
Target Description F18E9.4 /REP_DB=WormBase Gene ID /WP=CE02661 /TR=Q19567 /GB=AAA68810.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077053 NCBI Caenorhabditis elegans F18E9.4 (F18E9.4) mRNA, complete cds. 11/11 None
GENEFINDER00000039254 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8580609:8583363:1 11/11 None
F18E9.4 ENSEMBL cdna:known chromosome:CEL140:X:8580621:8584685:1 gene:F18E9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039245 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8580619-8584684(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18E9.4
Entrez Gene 184648 Entrez gene
SwissProt Q19567 EMBL-EBI
WormBase CE02661 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68810 Hypothetical protein F18E9.4 [Caenorhabditis elegans] ref|NP_509454.1| F18E9.4 [Caenorhabditis elegans] 1.0E-115
blast CAE74923 Hypothetical protein CBG22804 [Caenorhabditis briggsae] 5.0E-76
blast AAA68810 Hypothetical protein F18E9.4 [Caenorhabditis elegans] ref|NP_509454.1| F18E9.4 [Caenorhabditis elegans] 1.0E-70
blast CAE74923 Hypothetical protein CBG22804 [Caenorhabditis briggsae] 5.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039254 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182502_AT
tgaagatgtcacgtttccagaagctgaagctgttaatgtaacgcatcaggaaattaaaaa
cgacaaggagtatacatcaaccactactcatgacccacttgaaatttcacactcaaaacg
gtttcttcctcaatctggcatgaatcgaaaatttagtccatccaccgttaggaggagaaa
cgccgtctgtaaacgaagagccaattataacaatgtccatgacaccaatacaaagcctaa
gtcagccggaagaaaaattcccaagaaatcatttgatgatcccttatcgtctgttgaaag
ggaaaaagatatgatgaaattgaaaagggatgtatttcgtctgcgcaatgagatgaatct
ggtcaaagcactattgaataagatgtacaagagaatgtacagaaaacagagcgattttct
aaagaagagaagtatgcatgaaaagcaatcaactcgactttctgcagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGATGTCACGTTTCCAGAAGCT 487 575 108 Antisense
ATACATCAACCACTACTCATGACCC 117 25 179 Antisense
GACCCACTTGAAATTTCACACTCAA 596 381 199 Antisense
CAAAACGGTTTCTTCCTCAATCTGG 655 189 221 Antisense
TTTAGTCCATCCACCGTTAGGAGGA 75 665 259 Antisense
GGAGGAGAAACGCCGTCTGTAAACG 137 493 278 Antisense
GTCCATGACACCAATACAAAGCCTA 396 477 322 Antisense
ACAAAGCCTAAGTCAGCCGGAAGAA 485 111 337 Antisense
GATGATCCCTTATCGTCTGTTGAAA 93 411 382 Antisense
AAAGGGATGTATTTCGTCTGCGCAA 529 121 431 Antisense
AATCAACTCGACTTTCTGCAGTTCA 105 171 554 Antisense
Sequence Source Affymetrix Proprietary Database