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[182501_at]

Description C46A5.5 /REP_DB=WormBase Gene ID /WP=CE08755 /TR=Q18649 /GB=AAB03145.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 3.3
(-3)
A 		19.1
(-2)
A 		2.7
(-3)
A 		96.9
(3)
P 		94
B 19.4
(-1.3)
A 		18.1
(-1.4)
A 		3.1
(-3)
A 		61
(3)
A 		58
C 30.1
(-1.5)
A 		15.6
(-3)
A 		22.2
(-2.3)
A 		75.4
(3)
P 		60
avr 17.6
(-2.3) 		17.6
(-2.3) 		9.3
(-3) 		77.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 2.3
(-3)
A 		6.2
(-2.9)
A 		85.9
(-0.9)
P 		90.1
(-0.8)
P 		151
(0.7)
P 		241
(3)
P 		239
B 17.5
(-3)
A 		20.7
(-2.9)
A 		46.7
(-2.2)
A 		106.7
(-0.7)
P 		188.6
(1.4)
P 		250.9
(3)
P 		233
C 15.2
(-2.9)
A 		13.2
(-3)
A 		13.4
(-3)
A 		90.9
(-0.8)
P 		176.2
(1.6)
P 		227.6
(3)
P 		214
avr 11.7
(-3) 		13.4
(-3) 		48.7
(-2) 		95.9
(-0.8) 		171.9
(1.2) 		239.8
(3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-2.8)
A 		4.2
(-1.4)
A 		0.7
(-3)
A 		14.2
(3)
P 		14
B 6.2
(-0.3)
A 		4.5
(-1.1)
A 		0.7
(-3)
A 		13
(3)
A 		12
C 10
(1)
A 		4.5
(-3)
A 		7.7
(-0.7)
A 		12.7
(3)
P 		8
avr 5.8
(-1.4) 		4.4
(-2.2) 		3
(-3) 		13.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.2
(-2.8)
A 		18.7
(-1.1)
P 		22.9
(-0.7)
P 		45.6
(1.7)
P 		58.7
(3)
P 		58
B 6.1
(-3)
A 		6.9
(-2.9)
A 		11.3
(-2.6)
A 		28.3
(-1.5)
P 		76.6
(1.8)
P 		93.6
(3)
P 		88
C 5.6
(-2.8)
A 		4
(-3)
A 		3.4
(-3)
A 		18.3
(-1.8)
P 		57
(1.4)
P 		76.2
(3)
P 		73
avr 4
(-3) 		4.4
(-3) 		11.1
(-2.4) 		23.2
(-1.4) 		59.7
(1.6) 		76.2
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8467
Sequence Type Exemplar sequence
Representative Public ID C46A5.5 NCBI
Target Description C46A5.5 /REP_DB=WormBase Gene ID /WP=CE08755 /TR=Q18649 /GB=AAB03145.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068873 NCBI Caenorhabditis elegans C46A5.5 (C46A5.5) mRNA, complete cds. 11/11 None
SNAP00000025530 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7757648:7759610:-1 11/11 None
GENEFINDER00000025541 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7757648:7759610:-1 11/11 None
C46A5.5 ENSEMBL cdna:known chromosome:CEL140:IV:7757985:7759610:-1 gene:C46A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7757990-7759616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46A5.5
Entrez Gene 183499 Entrez gene
SwissProt Q18649 EMBL-EBI
WormBase CE08755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03145 Hypothetical protein C46A5.5 [Caenorhabditis elegans] ref|NP_501274.1| C46A5.5 [Caenorhabditis elegans] 1.0E-155
blast AAB03145 Hypothetical protein C46A5.5 [Caenorhabditis elegans] ref|NP_501274.1| C46A5.5 [Caenorhabditis elegans] 1.0E-135
blast CAE70873 Hypothetical protein CBG17663 [Caenorhabditis briggsae] 1.0E-32
blast CAE70873 Hypothetical protein CBG17663 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:182501_AT
gaagaggcttctcaagctcttctccgatgtttccgtttggttggaaacgcaaaaaccaaa
aacgggaagcgtaatatttctgtatgggaggatctccatttatcttcgtgtgaatttctc
aactttatttctgatacgaaatcccttgagaagtcaaagtttcaaatttttcttgttaat
ggatgttccgctttgaaaaacacaatgctggctgccaggcctagaactgaggaaacgcat
caacttatgcttggattcatagtcagtctttacaaggcttatgatgtggctctacgtact
ggagtgataactgttggaggtgatctctcgaggttattagaacaagtatttggaaaatat
ttgtcaactccgaagtggatgtctccaactcatgtaccttggatccagacaaagaatatt
ttcaaacttttactttcgattatcgagattcctgagataatttacgacttgattgatctg
ctgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGGCTTCTCAAGCTCTTCTCC 175 339 412 Antisense
TTCTCCGATGTTTCCGTTTGGTTGG 585 693 431 Antisense
AGGATCTCCATTTATCTTCGTGTGA 391 57 500 Antisense
GAAAAACACAATGCTGGCTGCCAGG 309 353 606 Antisense
GGCTGCCAGGCCTAGAACTGAGGAA 406 539 621 Antisense
GCTTGGATTCATAGTCAGTCTTTAC 224 307 660 Antisense
GGCTTATGATGTGGCTCTACGTACT 679 535 687 Antisense
GGAGGTGATCTCTCGAGGTTATTAG 572 515 727 Antisense
GTCAACTCCGAAGTGGATGTCTCCA 202 465 774 Antisense
CAACTCATGTACCTTGGATCCAGAC 425 187 797 Antisense
TACGACTTGATTGATCTGCTGTGTA 107 649 874 Antisense
Sequence Source Affymetrix Proprietary Database