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[182500_at]

Description F48B9.7 /REP_DB=WormBase Gene ID /WP=CE04615 /TR=Q20555 /GB=AAA81751.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 52      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 57.4
(1.7)
A 		66.6
(3)
M 		60.9
(2.2)
A 		25.4
(-3)
A 		41
B 47.4
(0.3)
A 		57.4
(3)
A 		39.4
(-1.9)
A 		35.4
(-3)
A 		22
C 58.1
(3)
A 		38.1
(0.4)
A 		28.2
(-0.8)
A 		11.3
(-3)
A 		47
avr 54.3
(3) 		54
(2.9) 		42.8
(0.7) 		24
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 81.1
(3)
A 		47.4
(-2.5)
A 		50.5
(-2)
A 		44.3
(-3)
A 		47
(-2.6)
A 		47.8
(-2.4)
A 		37
B 68.8
(3)
P 		56
(1)
P 		46.7
(-0.5)
A 		64.3
(2.3)
A 		30.9
(-3)
A 		42.7
(-1.1)
A 		38
C 25.1
(0.3)
A 		35.2
(1.8)
A 		29.6
(1)
A 		35.9
(1.9)
A 		2.7
(-3)
A 		43.5
(3)
A 		41
avr 58.3
(3) 		46.2
(0.7) 		42.3
(-0.1) 		48.2
(1.1) 		26.9
(-3) 		44.7
(0.4) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.9
(3)
A 		14.5
(0.8)
M 		15.9
(1.3)
A 		3.7
(-3)
A 		17
B 15.1
(3)
A 		14.2
(2.3)
A 		9.1
(-1.7)
A 		7.5
(-3)
A 		8
C 19.2
(3)
A 		11
(0.2)
A 		9.8
(-0.3)
A 		1.9
(-3)
A 		17
avr 18.4
(3) 		13.2
(0.8) 		11.6
(0.1) 		4.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 15
(1.1)
A 		16.8
(3)
A 		11
(-3)
A 		11.2
(-2.8)
A 		14.2
(0.3)
A 		11.6
(-2.4)
A 		6
B 24
(3)
P 		18.6
(0.4)
P 		11.3
(-3)
A 		17
(-0.3)
A 		12.6
(-2.4)
A 		15.9
(-0.8)
A 		13
C 9.3
(0.7)
A 		10.7
(1.3)
A 		7.5
(-0.1)
A 		7.2
(-0.2)
A 		0.9
(-3)
A 		14.6
(3)
A 		14
avr 16.1
(3) 		15.4
(2.4) 		9.9
(-2.4) 		11.8
(-0.7) 		9.2
(-3) 		14
(1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18283
Sequence Type Exemplar sequence
Representative Public ID F48B9.7 NCBI
Target Description F48B9.7 /REP_DB=WormBase Gene ID /WP=CE04615 /TR=Q20555 /GB=AAA81751.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075999
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075999 NCBI Caenorhabditis elegans F48B9.7 (F48B9.7) mRNA, complete cds. A 
F48B9.7 ENSEMBL cdna:known chromosome:CEL140:X:2168661:2169458:-1 gene:F48B9.7 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2169188-2169458(-) 100.0 100.0
Public Domain and Genome References
Ensembl F48B9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508400 F48B9.7 [Caenorhabditis elegans] 1.0E-121
blast AAK39265 Hypothetical protein R11E3.3 [Caenorhabditis elegans] ref|NP_500640.1| R11E3.3 [Caenorhabditis elegans] 2.0E-29
blast T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 6.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182500_AT
ggattaccaacatctacataccaccaccatcctcgggatcttctctaccggaggttatgc
ctcagattgcaactctgctctcaaacggatcgcacaacaaccacctcatcctcggagact
ttaacgctcatgatgatctctggttcagcaacattcagtgtaacaggggagcggcaattg
cagacactatcgagttctcgggcatggtgcctatgaacgacgactcctacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTACCAACATCTACATACCACC 491 509 17 Antisense
GGATCTTCTCTACCGGAGGTTATGC 541 509 52 Antisense
GAGGTTATGCCTCAGATTGCAACTC 512 403 67 Antisense
ATTGCAACTCTGCTCTCAAACGGAT 585 5 82 Antisense
TCAAACGGATCGCACAACAACCACC 532 629 97 Antisense
ACCTCATCCTCGGAGACTTTAACGC 62 87 119 Antisense
CGCTCATGATGATCTCTGGTTCAGC 162 255 141 Antisense
CAGGGGAGCGGCAATTGCAGACACT 458 207 180 Antisense
TGCAGACACTATCGAGTTCTCGGGC 555 577 195 Antisense
GAGTTCTCGGGCATGGTGCCTATGA 425 397 208 Antisense
TGCCTATGAACGACGACTCCTACAC 264 585 224 Antisense
Sequence Source Affymetrix Proprietary Database