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[182499_s_at]

Description C24F3.1A /REP_DB=WormBase Gene ID /WP=CE18517 /TR=Q9U3P5 /GB=CAA18770.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 22      6grp_total > 04      4grp_total > 58      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1938
1 2 3 4 range
A 1700
(-0.1)
P 		2097.9
(1.1)
P 		2696.8
(3)
P 		759.1
(-3)
P 		1938
B 1354.9
(-0.9)
P 		2043.6
(1.5)
P 		2451.7
(3)
P 		778.9
(-3)
P 		1673
C 1393.8
(-1)
P 		2155.9
(1.9)
P 		2465.8
(3)
P 		846
(-3)
P 		1620
avr 1482.9
(-0.6) 		2099.1
(1.5) 		2538.1
(3) 		794.7
(-3) 		1743

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 992
1 2 3 4 5 6 range
A 1969.7
(3)
P 		1479.3
(-0.3)
P 		1570.8
(0.3)
P 		1688.2
(1.1)
P 		1494.9
(-0.2)
P 		1074.9
(-3)
P 		895
B 2066
(3)
P 		1563.5
(-0)
P 		1360.5
(-1.3)
P 		1592.8
(0.1)
P 		1484.6
(-0.5)
P 		1074.5
(-3)
P 		992
C 1864.2
(3)
P 		1755.9
(2.1)
P 		1678
(1.4)
P 		1602.4
(0.8)
P 		1279.6
(-2)
P 		1164.7
(-3)
P 		700
avr 1966.6
(3) 		1599.6
(0.4) 		1536.4
(0) 		1627.8
(0.6) 		1419.7
(-0.8) 		1104.7
(-3) 		862
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 748
1 2 3 4 range
A 619
(2.1)
P 		455.4
(0.5)
P 		705
(3)
P 		111.1
(-3)
P 		594
B 432.1
(1)
P 		504.7
(2.1)
P 		568.1
(3)
P 		166
(-3)
P 		402
C 461.4
(-0.3)
P 		619.8
(1)
P 		859.4
(3)
P 		142.7
(-3)
P 		717
avr 504.2
(0.8) 		526.6
(1.1) 		710.8
(3) 		139.9
(-3) 		571

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 363.1
(-0.7)
P 		526.1
(3)
P 		342.1
(-1.2)
P 		428.2
(0.8)
P 		451.1
(1.3)
P 		261.7
(-3)
P 		264
B 718.9
(3)
P 		520.4
(-0.1)
P 		330.4
(-3)
P 		421.9
(-1.6)
P 		603.2
(1.2)
P 		400.7
(-1.9)
P 		389
C 691
(3)
P 		535.8
(0.5)
P 		427.1
(-1.3)
P 		322.2
(-3)
P 		414.1
(-1.5)
P 		389.9
(-1.9)
P 		369
avr 591
(3) 		527.4
(1.4) 		366.5
(-2.6) 		390.8
(-2) 		489.5
(0.5) 		350.8
(-3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182499_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8812
Sequence Type Exemplar sequence
Representative Public ID C24F3.1A NCBI
Target Description C24F3.1A /REP_DB=WormBase Gene ID /WP=CE18517 /TR=Q9U3P5 /GB=CAA18770.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069467(11), NM_069468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069467 NCBI Caenorhabditis elegans C24F3.1b (C24F3.1) mRNA, complete cds. 11/11 None
NM_069468 NCBI Caenorhabditis elegans C24F3.1a (C24F3.1) mRNA, complete cds. 11/11 None
SNAP00000043527 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10219645:10221250:-1 11/11 None
GENEFINDER00000043529 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10217452:10221250:-1 11/11 None
C24F3.1b.1 ENSEMBL cdna:known chromosome:CEL140:IV:10219416:10221252:-1 gene:C24F3.1 11/11 A 
C24F3.1b.2 ENSEMBL cdna:known chromosome:CEL140:IV:10219416:10221716:-1 gene:C24F3.1 11/11 A 
C24F3.1b.3 ENSEMBL cdna:known chromosome:CEL140:IV:10219467:10221253:-1 gene:C24F3.1 11/11 None
C24F3.1a ENSEMBL cdna:known chromosome:CEL140:IV:10219781:10221252:-1 gene:C24F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10219786-10221256(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24F3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18772 Hypothetical protein C24F3.1b [Caenorhabditis elegans] ref|NP_501868.1| C24F3.1b [Caenorhabditis elegans] 0.0
blast CAA18770 Hypothetical protein C24F3.1a [Caenorhabditis elegans] ref|NP_501869.1| C24F3.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005547 EMBL-EBI Longevity-assurance protein (LAG1) 1.6E-79
Pfam IPR005547 EMBL-EBI Longevity-assurance protein (LAG1) 1.6E-79
Pfam IPR005547 EMBL-EBI Longevity-assurance protein (LAG1) 1.1E-73
Pfam IPR003010 EMBL-EBI Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2.8E-9
Pfam IPR003010 EMBL-EBI Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501868.1 6 35-57,81-103,209-226,230-252,265-287,307-329
NP_501869.1 6 35-57,81-103,207-224,228-250,263-285,305-327
C24F3.1b.1 6 35-57,81-103,209-226,230-252,265-287,307-329
C24F3.1b.2 6 35-57,81-103,209-226,230-252,265-287,307-329
C24F3.1b.3 6 35-57,81-103,209-226,230-252,265-287,307-329
C24F3.1a 6 35-57,81-103,207-224,228-250,263-285,305-327
SNAP00000043527 6 35-57,81-103,207-224,228-250,263-285,305-327
GENEFINDER00000043529 5 35-57,81-103,210-232,268-287,307-329
Sequence
Target Sequence 
>C. ELEGANS:182499_S_AT
ttacttcatcttccaaatttcctactggattcatcaattcccagagttctatctgcaaaa
gctgaagcgcgacgagattcgccaaaagagtgttcaggctattcttcatattgccttcat
atcaatcgcatacttcttcaatttcacacgtgttggattggcacttattactctcgaata
cattactcaattgattttccatattgcacgtttcgcacattttgttggacgcaaagggtt
gtctgacccagccttcaagctgttcaacggttcattcgttcttgttcgtcttggatcaat
cattatcgccgtcatgactttctggtacgggcttcgtcaagcagaatctccgtttgtgga
tatttctgctggaaacttcaatacagcagttatccggctcaatgttcttcttgccgttgt
tctgctccaactcttccttttgtattcatttgttgtattccatatgggacgattccgtga
gagcaacgctaagaaagaaaagaagaagtctgctgctgctgctgcagctgttcctaaaaa
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTTCATCTTCCAAATTTCCTAC 119 683 540 Antisense
GATTCATCAATTCCCAGAGTTCTAT 539 431 567 Antisense
ATCGCATACTTCTTCAATTTCACAC 546 37 664 Antisense
TGGATTGGCACTTATTACTCTCGAA 43 551 693 Antisense
TGATTTTCCATATTGCACGTTTCGC 235 563 731 Antisense
TCTGACCCAGCCTTCAAGCTGTTCA 64 609 781 Antisense
TTATCGCCGTCATGACTTTCTGGTA 203 681 842 Antisense
CTTTCTGGTACGGGCTTCGTCAAGC 142 219 857 Antisense
TATCCGGCTCAATGTTCTTCTTGCC 326 657 930 Antisense
AACTCTTCCTTTTGTATTCATTTGT 388 141 968 Antisense
TGCTGCTGCAGCTGTTCCTAAAAAG 143 583 1056 Antisense
Sequence Source Affymetrix Proprietary Database