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[182496_at]

Description B0496.2 /REP_DB=WormBase Gene ID /WP=CE06714 /TR=Q17524 /GB=AAK18874.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 17      6grp_cgc > 67      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 8.2
(-0.7)
A 		5.7
(-3)
A 		12.3
(3)
A 		6
(-2.7)
A 		7
B 1.6
(-3)
A 		5.5
(-2)
A 		5.4
(-2.1)
A 		25.7
(3)
A 		24
C 3.2
(-3)
A 		21.2
(3)
A 		4
(-2.7)
A 		20.7
(2.8)
A 		18
avr 4.3
(-3) 		10.8
(-0) 		7.2
(-1.7) 		17.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.3
(-1.3)
A 		2.8
(-2.2)
A 		1.3
(-3)
A 		5
(-0.9)
A 		12
(3)
A 		3.6
(-1.7)
A 		11
B 1
(-3)
A 		4.4
(-2)
A 		7.2
(-1.2)
A 		21.5
(3)
A 		4.1
(-2.1)
A 		9.2
(-0.6)
A 		21
C 10.4
(-0.7)
A 		11.5
(-0.4)
A 		7.9
(-1.3)
A 		3.5
(-2.6)
A 		1.9
(-3)
A 		23.7
(3)
A 		22
avr 5.2
(-3) 		6.2
(-2.1) 		5.5
(-2.7) 		10
(1.1) 		6
(-2.3) 		12.2
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3
(2.5)
A 		1.2
(-2.2)
A 		3.2
(3)
A 		0.9
(-3)
A 		2
B 0.5
(-3)
A 		1.4
(-1.9)
A 		1.2
(-2.2)
A 		5.5
(3)
A 		5
C 1.1
(-3)
A 		6.1
(3)
A 		1.4
(-2.6)
A 		3.5
(-0.1)
A 		5
avr 1.5
(-3) 		2.9
(1.7) 		1.9
(-1.7) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-2.1)
A 		1
(-1.7)
A 		0.3
(-3)
A 		1.3
(-1.2)
A 		3.6
(3)
A 		0.9
(-1.9)
A 		3
B 0.3
(-3)
A 		1.5
(-1.7)
A 		1.8
(-1.3)
A 		5.7
(3)
A 		1.7
(-1.4)
A 		3.4
(0.4)
A 		5
C 3.8
(-0.4)
A 		3.5
(-0.6)
A 		2
(-1.8)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		7.9
(3)
A 		7
avr 1.6
(-2.6) 		2
(-1.7) 		1.4
(-3) 		2.6
(-0.3) 		2
(-1.7) 		4.1
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9591
Sequence Type Exemplar sequence
Representative Public ID B0496.2 NCBI
Target Description B0496.2 /REP_DB=WormBase Gene ID /WP=CE06714 /TR=Q17524 /GB=AAK18874.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068788 NCBI Caenorhabditis elegans B0496.2 (B0496.2) mRNA, complete cds. 11/11 None
SNAP00000020647 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7447948:7449202:1 9/11 None
GENEFINDER00000020649 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7447948:7449153:1 11/11 None
B0496.2 ENSEMBL cdna:known chromosome:CEL140:IV:7447963:7449153:1 gene:B0496.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7447968-7449159(+) 93.71 100.0
Public Domain and Genome References
Gene Title
Ensembl B0496.2
Entrez Gene 182006 Entrez gene
SwissProt Q17524 EMBL-EBI
WormBase CE06714 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18874 Hypothetical protein B0496.2 [Caenorhabditis elegans] ref|NP_501189.1| B0496.2 [Caenorhabditis elegans] 0.0
blast AAK18874 Hypothetical protein B0496.2 [Caenorhabditis elegans] ref|NP_501189.1| B0496.2 [Caenorhabditis elegans] 1.0E-178
blast NP_501139 R13A1.3 [Caenorhabditis elegans] gb|AAA81474.2| Hypothetical protein R13A1.3 [Caenorhabditis elegans] 1.0E-118
blast NP_501139 R13A1.3 [Caenorhabditis elegans] gb|AAA81474.2| Hypothetical protein R13A1.3 [Caenorhabditis elegans] 1.0E-116
blast AAK18873 Hypothetical protein B0496.1 [Caenorhabditis elegans] ref|NP_501188.1| B0496.1 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.0E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182496_AT
aaagctcacattataattccatctgagtcctttgctgctatggaaaaattgatgaatttt
cttcatcctccttataaaatggaacgagaaattgttgaagaagttctggatctagcttcg
aaatggaaaatggagtcggttctcacaaaatacgagcaacttctcatcagagaacgttgc
aagtgccaagattcttcccttaaaaatgtcaaactggcggataaattcaagatgagatct
cttcttgaagacatcctctacaacgatacatgcaatgtttatgatttactcgatggaaac
gactatagctcttggactcgtgcagcaatgtttgaatttgttctggaaatggagaatgac
tatgctgatgatgacgaatctgaaaacacactttatggtgtcttatcaatggcagagtta
ttatatcaaaataagatttataaaataaataaactatttatttttcaagattattttaaa
tttcagaatacatcaaattatgcttcgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTCACATTATAATTCCATCTG 111 125 523 Antisense
CATCTGAGTCCTTTGCTGCTATGGA 88 213 542 Antisense
AGTTCTGGATCTAGCTTCGAAATGG 414 63 624 Antisense
TGGAGTCGGTTCTCACAAAATACGA 73 549 653 Antisense
TCATCAGAGAACGTTGCAAGTGCCA 563 619 686 Antisense
GCAAGTGCCAAGATTCTTCCCTTAA 381 321 701 Antisense
GAGATCTCTTCTTGAAGACATCCTC 269 397 756 Antisense
GACATCCTCTACAACGATACATGCA 436 369 772 Antisense
TGGAAACGACTATAGCTCTTGGACT 531 545 816 Antisense
TATGGTGTCTTATCAATGGCAGAGT 537 653 916 Antisense
GAATACATCAAATTATGCTTCGTCT 363 327 1008 Antisense
Sequence Source Affymetrix Proprietary Database