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[182495_at]

Description Y37H2A.5 /REP_DB=WormBase Gene ID /WP=CE24211 /TR=Q9U2P0 /GB=CAB60570.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 149
(-3)
P 		177
(-2.5)
P 		181.5
(-2.4)
P 		477.4
(3)
P 		328
B 164
(-3)
P 		166.1
(-3)
P 		269.3
(-0.9)
P 		468.4
(3)
P 		304
C 127.1
(-3)
P 		147.9
(-2.6)
P 		202.3
(-1.4)
P 		410.4
(3)
P 		283
avr 146.7
(-3) 		163.7
(-2.7) 		217.7
(-1.6) 		452.1
(3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 897
1 2 3 4 5 6 range
A 165.1
(-2.8)
P 		150.3
(-3)
P 		329
(-0.8)
P 		342
(-0.7)
P 		621.5
(2.7)
P 		646.8
(3)
P 		497
B 121.4
(-3)
P 		143.2
(-2.8)
P 		254.7
(-1.9)
P 		397
(-0.7)
P 		606.9
(1)
P 		847.3
(3)
P 		726
C 137.2
(-3)
P 		187.5
(-2.7)
P 		253.6
(-2.2)
P 		470.3
(-0.7)
P 		577.6
(-0)
P 		1018.8
(3)
P 		882
avr 141.2
(-3) 		160.3
(-2.8) 		279.1
(-1.8) 		403.1
(-0.7) 		602
(1) 		837.6
(3) 		696
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 54.3
(0)
P 		38.4
(-3)
P 		47.4
(-1.3)
P 		69.9
(3)
P 		32
B 52.3
(-1.8)
P 		41
(-3)
P 		62.4
(-0.8)
P 		99.8
(3)
P 		59
C 42.1
(-3)
P 		42.5
(-2.9)
P 		70.5
(3)
P 		69.2
(2.7)
P 		28
avr 49.6
(-1.6) 		40.6
(-3) 		60.1
(0) 		79.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 30.4
(-3)
P 		53.4
(-2.1)
P 		71.6
(-1.4)
P 		86.7
(-0.8)
P 		187.5
(3)
P 		157.5
(1.9)
P 		157
B 42.2
(-3)
P 		47.7
(-2.9)
P 		61.8
(-2.6)
P 		105.2
(-1.6)
P 		246.6
(1.5)
P 		316
(3)
P 		274
C 50.9
(-3)
P 		57.2
(-2.9)
P 		64.6
(-2.7)
P 		94.6
(-2.1)
P 		186.9
(-0.2)
P 		341.1
(3)
P 		290
avr 41.2
(-3) 		52.8
(-2.7) 		66
(-2.4) 		95.5
(-1.6) 		207
(1.3) 		271.5
(3) 		230
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14260
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.5 NCBI
Target Description Y37H2A.5 /REP_DB=WormBase Gene ID /WP=CE24211 /TR=Q9U2P0 /GB=CAB60570.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075136 NCBI Caenorhabditis elegans Y37H2A.5 (Y37H2A.5) mRNA, complete cds. 11/11 None
SNAP00000043009 ENSEMBL cdna:SNAP chromosome:CEL140:V:18128293:18141406:1 11/11 None
GENEFINDER00000043018 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18128293:18129710:1 11/11 None
Y37H2A.5 ENSEMBL cdna:known chromosome:CEL140:V:18128293:18129779:1 gene:Y37H2A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18128292-18129710(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.5
Entrez Gene 180187 Entrez gene
SwissProt Q9U2P0 EMBL-EBI
WormBase CE24211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60570 Hypothetical protein Y37H2A.5 [Caenorhabditis elegans] ref|NP_507537.1| Y37H2A.5 [Caenorhabditis elegans] 0.0
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 0.0
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-149
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 1.0E-45
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 7.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.2E-49
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-46
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Sequence
Target Sequence 
>C. ELEGANS:182495_AT
aaattcggtagttcgctcgcatatagtgatctcaatcaagctgaaaatttcgcatcgatt
ctcaaatcatgctcaccgattcacgccaaacaagtcagagtggagtatcctgaccttgca
tttgatgcatcgaaaattctatcgctgttccaaccaaaagcgctcactaacatcaaactg
aaatgctctaatttggctgatatctctgcaatcttcgaactggaacagtggaaaaatgcg
aaatcggtggaaattaatagtttcaccaaatttccaattggaaatctcttccatttgtct
caattctcagtcaagctggaatctttctccgttgacgatgcaatcaaaattcgagatatt
ctcttgaaatctccttcattccaaagcggcaaattcacttcatattcgtcgaattttcaa
gagatgctgaaagtcttcgtgccacgttttgacggcctgagtggctcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCGGTAGTTCGCTCGCATATA 36 117 697 Antisense
TCAAATCATGCTCACCGATTCACGC 500 627 758 Antisense
GAGTGGAGTATCCTGACCTTGCATT 643 401 794 Antisense
AATTCTATCGCTGTTCCAACCAAAA 649 175 831 Antisense
ATATCTCTGCAATCTTCGAACTGGA 280 21 896 Antisense
AATCTCTTCCATTTGTCTCAATTCT 62 171 979 Antisense
GGAATCTTTCTCCGTTGACGATGCA 68 533 1014 Antisense
ATCTCCTTCATTCCAAAGCGGCAAA 240 33 1065 Antisense
GCGGCAAATTCACTTCATATTCGTC 460 293 1082 Antisense
AGATGCTGAAAGTCTTCGTGCCACG 368 67 1118 Antisense
GTTTTGACGGCCTGAGTGGCTCACT 422 447 1142 Antisense
Sequence Source Affymetrix Proprietary Database