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[182494_at]

Description C29A12.6 /REP_DB=WormBase Gene ID /WP=CE20535 /TR=Q18290 /GB=CAA98248.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 9.4
(-3)
A 		30.7
(1.6)
A 		37.4
(3)
A 		9.6
(-3)
A 		28
B 25.8
(-2.4)
A 		47.7
(0.6)
A 		65.2
(3)
A 		21.1
(-3)
A 		44
C 10.9
(-2.6)
A 		64.5
(3)
A 		6.7
(-3)
A 		53.5
(1.9)
A 		58
avr 15.4
(-3) 		47.6
(3) 		36.4
(0.9) 		28.1
(-0.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 65.8
(-0.1)
A 		22.4
(-2.1)
A 		2.8
(-3)
A 		72.2
(0.2)
A 		131.8
(3)
P 		29.3
(-1.8)
A 		129
B 10.7
(-2.9)
A 		35.5
(-1.4)
A 		9.2
(-3)
A 		52
(-0.3)
A 		105
(3)
A 		29.5
(-1.7)
A 		96
C 19
(-2.6)
A 		12.2
(-3)
A 		42
(-1)
A 		103.3
(3)
A 		75.7
(1.2)
A 		25.9
(-2.1)
A 		91
avr 31.8
(-2) 		23.4
(-2.6) 		18
(-3) 		75.8
(1) 		104.2
(3) 		28.2
(-2.3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.4
(-1.6)
A 		6.7
(0.8)
A 		9.8
(3)
A 		1.4
(-3)
A 		8
B 8.2
(-0.9)
A 		11.8
(1.1)
A 		15.1
(3)
A 		4.5
(-3)
A 		11
C 3.6
(-2.5)
A 		18.5
(3)
A 		2.3
(-3)
A 		9
(-0.5)
A 		16
avr 5.1
(-2.9) 		12.3
(3) 		9.1
(0.4) 		5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12.1
(-1.2)
A 		8
(-1.9)
A 		0.6
(-3)
A 		18.3
(-0.3)
A 		39.8
(3)
P 		7.1
(-2)
A 		39
B 3.7
(-2.8)
A 		11.8
(-1.6)
A 		2.2
(-3)
A 		13.8
(-1.3)
A 		42.7
(3)
A 		11
(-1.7)
A 		41
C 7.1
(-2)
A 		3.7
(-3)
A 		10.7
(-1)
A 		20.8
(1.9)
A 		24.5
(3)
A 		8.7
(-1.6)
A 		21
avr 7.6
(-2.4) 		7.8
(-2.4) 		4.5
(-3) 		17.6
(-0.5) 		35.7
(3) 		8.9
(-2.2) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182494_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13995
Sequence Type Exemplar sequence
Representative Public ID C29A12.6 NCBI
Target Description C29A12.6 /REP_DB=WormBase Gene ID /WP=CE20535 /TR=Q18290 /GB=CAA98248.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073367 NCBI Caenorhabditis elegans C29A12.6 (C29A12.6) mRNA, complete cds. 11/11 None
SNAP00000041186 ENSEMBL cdna:SNAP chromosome:CEL140:V:10853858:10855035:1 11/11 None
GENEFINDER00000041192 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10850943:10855035:1 11/11 None
C29A12.6 ENSEMBL cdna:known chromosome:CEL140:V:10849779:10855088:1 gene:C29A12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10849778-10855035(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29A12.6
Entrez Gene 179504 Entrez gene
SwissProt Q18290 EMBL-EBI
WormBase CE20535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01217 Hypothetical protein C29A12.6 [Caenorhabditis elegans] emb|CAA98248.1| Hypothetical protein C29A12.6 [Caenorhabditis elegans] ref|NP_505768.1| C29A12.6 [Caenorhabditis elegans] 0.0
blast CAE64903 Hypothetical protein CBG09720 [Caenorhabditis briggsae] 0.0
blast CAB01217 Hypothetical protein C29A12.6 [Caenorhabditis elegans] emb|CAA98248.1| Hypothetical protein C29A12.6 [Caenorhabditis elegans] ref|NP_505768.1| C29A12.6 [Caenorhabditis elegans] 1.0E-136
blast CAE64903 Hypothetical protein CBG09720 [Caenorhabditis briggsae] 1.0E-102
blast CAA46928 collagen type XIV/undulin [Gallus gallus] 8.0E-11
blast CAA46928 collagen type XIV/undulin [Gallus gallus] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.3E-43
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.3E-43
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.3E-43
Sequence
Target Sequence 
>C. ELEGANS:182494_AT
tcacaacgacaagaaccccaattactaaacctaagcctttaataccgtacagttgtactg
cagatgtattctttttggtagacgtttctcaaggaactggagataaaagtcaacagtact
tagatattgctgcatcagcaatcagttctcttccaatttcacaagatactgtgcgcgtcg
gattgataagttattctggtcctggaagaactcatgttcgagttttcttggataagcaca
atgaaaaagaaaaacttattgaagaaatgttcctaatggaacgccacggtggaacaactc
gaacagccgatgcaattcgatacgctaccaagatttttgaggggaaagctcatccggcaa
ggaaaaatgtgaagaaagtattagttgtatttactgatggatattcacaagacaatccta
aagaggcatcaagaatggctagagcaaaaggcattcagttgattgcagtggcggttaaag
atagattggcacctccagatacagaacaactaacagaaattggagggaatgggaggagca
tctttatctcaccttccggacgagatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAACGACAAGAACCCCAATTAC 272 627 1340 Antisense
GCTGCATCAGCAATCAGTTCTCTTC 437 297 1468 Antisense
ATCAGTTCTCTTCCAATTTCACAAG 503 29 1480 Antisense
AAGATACTGTGCGCGTCGGATTGAT 140 155 1502 Antisense
CTGGTCCTGGAAGAACTCATGTTCG 108 241 1535 Antisense
GCCACGGTGGAACAACTCGAACAGC 2 275 1622 Antisense
GATGCAATTCGATACGCTACCAAGA 396 411 1648 Antisense
GGGGAAAGCTCATCCGGCAAGGAAA 61 489 1680 Antisense
GGCACCTCCAGATACAGAACAACTA 666 535 1827 Antisense
TGGGAGGAGCATCTTTATCTCACCT 642 553 1869 Antisense
TATCTCACCTTCCGGACGAGATCTT 19 659 1884 Antisense
Sequence Source Affymetrix Proprietary Database