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[182493_at]

Description C50C10.5 /REP_DB=WormBase Gene ID /WP=CE05463 /TR=Q18734 /GB=CAA96612.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 0      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 67
(3)
P 		57.1
(-3)
A 		66.8
(2.9)
A 		65.6
(2.2)
A 		10
B 69.6
(0.6)
P 		61.3
(-0.4)
A 		41.9
(-3)
A 		87.5
(3)
A 		46
C 49.5
(-1.8)
P 		37.5
(-3)
A 		71.3
(0.3)
A 		99.2
(3)
P 		62
avr 62
(-1.1) 		52
(-3) 		60
(-1.5) 		84.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 77.4
(3)
A 		35.6
(-0.5)
A 		53.2
(1)
A 		8.2
(-2.8)
A 		45.3
(0.3)
A 		6.1
(-3)
A 		71
B 50.6
(-1)
A 		45.4
(-1.3)
A 		48.3
(-1.1)
A 		111.9
(3)
A 		48.4
(-1.1)
A 		19.7
(-3)
A 		92
C 30.3
(-0.9)
A 		76.3
(3)
A 		6.1
(-3)
A 		60.8
(1.7)
A 		16.5
(-2.1)
A 		36.7
(-0.4)
A 		70
avr 52.8
(1.9) 		52.4
(1.8) 		35.9
(-0.7) 		60.3
(3) 		36.7
(-0.6) 		20.8
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 24.4
(3)
P 		12.4
(-1.9)
A 		17.5
(0.2)
A 		9.6
(-3)
A 		15
B 22.2
(3)
P 		15.1
(-0.4)
A 		9.7
(-3)
A 		18.6
(1.3)
A 		13
C 16.4
(-0.6)
P 		10.8
(-3)
A 		24.9
(3)
A 		16.7
(-0.5)
P 		14
avr 21
(3) 		12.8
(-3) 		17.4
(0.4) 		15
(-1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.3
(3)
A 		12.7
(2.3)
A 		11.6
(1.7)
A 		2.1
(-2.7)
A 		13.7
(2.7)
A 		1.5
(-3)
A 		13
B 17.6
(-0.2)
A 		15.1
(-0.9)
A 		11.7
(-1.8)
A 		29.6
(3)
A 		19.7
(0.3)
A 		7.3
(-3)
A 		22
C 11.2
(-0.3)
A 		23.3
(3)
A 		1.6
(-3)
A 		12.2
(-0.1)
A 		5.3
(-2)
A 		12.3
(-0)
A 		22
avr 14.4
(1.4) 		17
(3) 		8.3
(-2.2) 		14.6
(1.6) 		12.9
(0.5) 		7
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11834
Sequence Type Exemplar sequence
Representative Public ID C50C10.5 NCBI
Target Description C50C10.5 /REP_DB=WormBase Gene ID /WP=CE05463 /TR=Q18734 /GB=CAA96612.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003338 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9819272:9822721:1 11/11 None
C50C10.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:9821861:9822792:1 gene:C50C10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9821860-9822721(+) 100.0 100.0
Public Domain and Genome References
Ensembl C50C10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96610 Hypothetical protein C50C10.4 [Caenorhabditis elegans] ref|NP_505534.1| Serpentine Receptor, class U family member (sru-31) [Caenorhabditis elegans] 1.0E-171
blast CAA96608 Hypothetical protein C50C10.2 [Caenorhabditis elegans] ref|NP_505532.1| Serpentine Receptor, class U family member (sru-29) [Caenorhabditis elegans] 1.0E-118
blast T20104 hypothetical protein C50C10.5 - Caenorhabditis elegans 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-20
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.0E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003338 11 30-52,69-91,111-133,153-175,207-229,254-276,370-392,412-434,454-476,501-523,543-562
Sequence
Target Sequence 
>C. ELEGANS:182493_AT
atgcaagcattcgtcccgtttatatatataattccaacttctgttatcatgattgttata
cttgtaaaatacagaaaagcaaaaatgattatgactgcagcttccttggattcaaatttg
tttgttacaataatgctctattttttctttaacgttttatttttcattggagactatata
catcttaacctcccatcttctggtttattgacgtcattgtgcgctaacacagagcctagt
tggacttacacgttcattgtcatttttgcgtatttcggtgattatggtaccatatcaagt
ccttttttagccagtttaatcaggtttacaataattatatcaccacataacaatacaaag
tactgtaaaacaataatgcgatgttttgtatggccttttataatactagttccaataact
cttacttttggaactatcccagctactggttattgtaagcaattgagctcaccattcaat
ttcggtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAGCATTCGTCCCGTTTATAT 41 45 97 Antisense
TTATGACTGCAGCTTCCTTGGATTC 674 679 185 Antisense
AGACTATATACATCTTAACCTCCCA 213 71 267 Antisense
TAACCTCCCATCTTCTGGTTTATTG 484 637 282 Antisense
TATTGACGTCATTGTGCGCTAACAC 567 663 302 Antisense
GAGCCTAGTTGGACTTACACGTTCA 471 383 328 Antisense
CATTGTCATTTTTGCGTATTTCGGT 116 217 351 Antisense
TATCAAGTCCTTTTTTAGCCAGTTT 207 659 389 Antisense
TGCGATGTTTTGTATGGCCTTTTAT 644 583 473 Antisense
TTTGGAACTATCCCAGCTACTGGTT 701 663 523 Antisense
GAGCTCACCATTCAATTTCGGTGCA 665 387 561 Antisense
Sequence Source Affymetrix Proprietary Database