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[182492_at]

Description C16C4.4 /REP_DB=WormBase Gene ID /WP=CE08200 /TR=O16552 /GB=AAB93661.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.7
(-1.8)
A 		7.7
(3)
A 		5.6
(1)
A 		1.5
(-3)
A 		6
B 0.7
(-3)
A 		18
(3)
A 		1.1
(-2.9)
A 		1
(-2.9)
A 		17
C 4.3
(-2)
A 		19.6
(3)
A 		4.2
(-2)
A 		1.3
(-3)
A 		18
avr 2.6
(-2.4) 		15.1
(3) 		3.6
(-2) 		1.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3.5
(-3)
A 		3.5
(-3)
A 		53.6
(3)
A 		42
(1.6)
A 		44.5
(1.9)
A 		9.1
(-2.3)
A 		50
B 1.4
(-3)
A 		4.9
(-2.5)
A 		18.8
(-0.3)
A 		40.2
(3)
A 		28.8
(1.2)
A 		28.9
(1.3)
P 		39
C 0.7
(-3)
A 		22
(-0.2)
A 		18.4
(-0.7)
A 		13.6
(-1.3)
A 		31.6
(1)
A 		46.5
(3)
M 		46
avr 1.9
(-3) 		10.1
(-1.5) 		30.3
(2.1) 		31.9
(2.4) 		35
(3) 		28.2
(1.8) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(0.2)
A 		1.7
(3)
A 		1.5
(2.2)
A 		0.2
(-3)
A 		2
B 0.2
(-3)
A 		4.5
(3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		4
C 1.4
(-1.7)
A 		5.6
(3)
A 		1.5
(-1.6)
A 		0.2
(-3)
A 		5
avr 0.9
(-1.9) 		3.9
(3) 		1.1
(-1.5) 		0.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.7)
A 		11.7
(2.2)
A 		10.6
(1.7)
A 		13.4
(3)
A 		2.2
(-2.3)
A 		13
B 0.5
(-3)
A 		1.6
(-2.4)
A 		4.6
(-0.8)
A 		10.7
(2.5)
A 		11.7
(3)
A 		10.8
(2.5)
P 		11
C 0.3
(-3)
A 		6.7
(-0.5)
A 		4.7
(-1.3)
A 		2.7
(-2.1)
A 		10.2
(0.9)
A 		15.6
(3)
M 		15
avr 0.5
(-3) 		3.2
(-1.6) 		7
(0.5) 		8
(1) 		11.8
(3) 		9.5
(1.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4645
Sequence Type Exemplar sequence
Representative Public ID C16C4.4 NCBI
Target Description C16C4.4 /REP_DB=WormBase Gene ID /WP=CE08200 /TR=O16552 /GB=AAB93661.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061701 NCBI Caenorhabditis elegans C16C4.4 (C16C4.4) mRNA, complete cds. 11/11 None
SNAP00000026899 ENSEMBL cdna:SNAP chromosome:CEL140:II:1869589:1870692:1 11/11 None
GENEFINDER00000026913 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1869425:1870692:1 11/11 None
C16C4.4 ENSEMBL cdna:known chromosome:CEL140:II:1869425:1870692:1 gene:C16C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1869587-1870691(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.4
Entrez Gene 182658 Entrez gene
SwissProt O16552 EMBL-EBI
WormBase CE34692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-151
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-127
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-98
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 5.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.5E-38
Pfam IPR002083 EMBL-EBI MATH 2.9E-50
Pfam IPR002083 EMBL-EBI MATH 1.5E-21
Pfam IPR002083 EMBL-EBI MATH 2.9E-50
Sequence
Target Sequence 
>C. ELEGANS:182492_AT
aaataactgacttaccatgcgacgaagacgaggattcaaaaacgtttcttttaagcagta
ctgttagaaatatttcaagcattgaagaaggagacgactattacactgaaacaacgatac
gtcacaatattccatggagaatgcaaattaaaagagatgatggattttttggattatttt
tgagatgtgaaaaagaggattgtgaggatcctggaaaatcttggagtatcgaattagatt
atgaactaagattggtgtctttgaatggacagagcttgacttttagtgattcagacttgt
ttatttatccatcgggtgaaggttttcaaaaattcatgagatgggatgacatggaagaga
agtatatggtgaatggtagtatcattattgaagctcgtggaaaaatcactagtcttgaag
aaagtgacgacgaatccagcagtgagaatgaagaagacgattcgagcgaatcccattcag
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAACTGACTTACCATGCGACGA 311 117 278 Antisense
GACTTACCATGCGACGAAGACGAGG 708 369 286 Antisense
GAGACGACTATTACACTGAAACAAC 618 393 368 Antisense
CAACGATACGTCACAATATTCCATG 281 187 389 Antisense
GAGGATCCTGGAAAATCTTGGAGTA 586 403 481 Antisense
TGGACAGAGCTTGACTTTTAGTGAT 289 547 543 Antisense
CAGACTTGTTTATTTATCCATCGGG 564 199 569 Antisense
TTATCCATCGGGTGAAGGTTTTCAA 300 567 582 Antisense
GCTCGTGGAAAAATCACTAGTCTTG 504 299 670 Antisense
AAGTGACGACGAATCCAGCAGTGAG 695 157 699 Antisense
GATTCGAGCGAATCCCATTCAGAAA 281 433 736 Antisense
Sequence Source Affymetrix Proprietary Database