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[182490_at]

Description ZK470.6 /REP_DB=WormBase Gene ID /WP=CE05091 /TR=Q23509 /GB=AAA80399.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 8.8
(-3)
A 		129.9
(0.6)
P 		208.5
(3)
P 		38.8
(-2.1)
A 		200
B 21
(-2.6)
A 		196
(3)
P 		184.6
(2.6)
P 		8.3
(-3)
A 		188
C 4.5
(-3)
A 		184.2
(2.3)
P 		207.7
(3)
P 		11.4
(-2.8)
A 		203
avr 11.4
(-3) 		170
(2) 		200.3
(3) 		19.5
(-2.7) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 16.5
(-3)
A 		122.8
(2.7)
P 		52.1
(-1.1)
A 		88.9
(0.9)
M 		127.7
(3)
P 		65.5
(-0.4)
A 		111
B 14.6
(-3)
A 		187.7
(3)
P 		26.1
(-2.6)
A 		94.4
(-0.2)
P 		70.1
(-1.1)
P 		61.7
(-1.4)
A 		173
C 5.5
(-3)
A 		172.5
(3)
P 		129.4
(1.5)
A 		66.6
(-0.8)
A 		70.7
(-0.7)
P 		9.4
(-2.9)
A 		167
avr 12.2
(-3) 		161
(3) 		69.2
(-0.7) 		83.3
(-0.1) 		89.5
(0.1) 		45.5
(-1.7) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 3.2
(-3)
A 		28.2
(-0.1)
P 		54.5
(3)
P 		5.7
(-2.7)
A 		51
B 6.7
(-2.4)
A 		48.4
(3)
P 		42.8
(2.3)
P 		1.8
(-3)
A 		47
C 1.5
(-3)
A 		53
(1.4)
P 		72.4
(3)
P 		1.9
(-3)
A 		71
avr 3.8
(-2.9) 		43.2
(1.5) 		56.6
(3) 		3.1
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 3
(-3)
A 		43.7
(3)
P 		11.3
(-1.8)
A 		22.6
(-0.1)
M 		38.5
(2.2)
P 		16
(-1.1)
A 		41
B 5.1
(-3)
A 		62.5
(3)
P 		6.3
(-2.9)
A 		25
(-0.9)
P 		28.5
(-0.6)
P 		23
(-1.1)
A 		57
C 2
(-3)
A 		52.6
(3)
P 		32.9
(0.7)
A 		13.4
(-1.6)
A 		22.9
(-0.5)
P 		3.1
(-2.9)
A 		51
avr 3.4
(-3) 		52.9
(3) 		16.8
(-1.4) 		20.3
(-1) 		30
(0.2) 		14
(-1.7) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16303
Sequence Type Exemplar sequence
Representative Public ID ZK470.6 NCBI
Target Description ZK470.6 /REP_DB=WormBase Gene ID /WP=CE05091 /TR=Q23509 /GB=AAA80399.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076308 NCBI Caenorhabditis elegans ZK470.6 (ZK470.6) mRNA, complete cds. 11/11 None
SNAP00000000136 ENSEMBL cdna:SNAP chromosome:CEL140:X:4176245:4177281:-1 11/11 None
GENEFINDER00000000139 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4176245:4177281:-1 11/11 None
ZK470.6 ENSEMBL cdna:known chromosome:CEL140:X:4176245:4177281:-1 gene:ZK470.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4176245-4177282(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK470.6
Entrez Gene 191326 Entrez gene
SwissProt Q23509 EMBL-EBI
WormBase CE05091 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80399 Hypothetical protein ZK470.6 [Caenorhabditis elegans] ref|NP_508709.1| ZK470.6 [Caenorhabditis elegans] 1.0E-136
blast CAE68533 Hypothetical protein CBG14359 [Caenorhabditis briggsae] 1.0E-120
blast AAA19077 Hypothetical protein F42A10.6 [Caenorhabditis elegans] ref|NP_498340.1| F42A10.6 [Caenorhabditis elegans] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:182490_AT
gaccctgaagttgcaccggatgctccataccttatggcagattcttctctagaacaagaa
gaagaatgcgttgctcttccgaatcgaacacgagttcgtccgtcgtttttccagtgtaaa
gaagacacaaagtttgaacttcacggcggtgcaattacaaacggcaacggtgatgatacc
tacccggtttccttcaactcgcctattcgaattttcctcgacatcaccagtaattctaac
aaacgatatgacaatttgggcgtcgaagtgtcaatctttaaacgttcaaccggatggttc
ggatgtgggtggatgtttttaccaagctttgggctgttgagcaactatgatatgtgtgac
gacaacccgtcatgtccggtgactccgggacgtcaggttatcgaattcgagattgatcca
acaaagttgtttacgaatctgttccgaatgattcactatgacttgtccgcctaccaaatg
atggttcgagtccgagacaatcgagatccctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCTGAAGTTGCACCGGATGCTC 611 381 208 Antisense
CATACCTTATGGCAGATTCTTCTCT 9 213 233 Antisense
ATCGAACACGAGTTCGTCCGTCGTT 168 37 290 Antisense
GTTTGAACTTCACGGCGGTGCAATT 14 451 339 Antisense
GCAACGGTGATGATACCTACCCGGT 130 319 371 Antisense
AACTCGCCTATTCGAATTTTCCTCG 666 141 403 Antisense
TTTTCCTCGACATCACCAGTAATTC 694 675 419 Antisense
GTGTCAATCTTTAAACGTTCAACCG 131 487 475 Antisense
TCATGTCCGGTGACTCCGGGACGTC 618 621 577 Antisense
TGATTCACTATGACTTGTCCGCCTA 41 565 656 Antisense
GTCCGAGACAATCGAGATCCCTACC 103 477 697 Antisense
Sequence Source Affymetrix Proprietary Database