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[182488_at]

Description R08H2.12 /REP_DB=WormBase Gene ID /WP=CE12616 /TR=O17994 /GB=CAB04637.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 37      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21.6
(3)
A 		19.8
(2.3)
A 		5.9
(-3)
A 		14.3
(0.2)
A 		16
B 26.2
(3)
A 		11.3
(-1)
A 		3.7
(-3)
A 		10.6
(-1.2)
A 		23
C 23.3
(1.1)
A 		25.9
(3)
A 		20.3
(-1.1)
A 		17.7
(-3)
A 		8
avr 23.7
(3) 		19
(0.9) 		10
(-3) 		14.2
(-1.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.8
(-2.6)
A 		3.1
(-3)
A 		28.1
(3)
A 		17.2
(0.4)
A 		3.9
(-2.8)
A 		3.1
(-3)
A 		25
B 6.7
(-2)
A 		3.8
(-3)
A 		21.7
(3)
A 		9.7
(-1)
A 		5.1
(-2.6)
A 		3.8
(-3)
A 		18
C 5.1
(-2.5)
A 		26.6
(3)
A 		3.1
(-3)
A 		16.1
(0.3)
A 		3.3
(-2.9)
A 		7.6
(-1.9)
A 		24
avr 5.5
(-2.4) 		11.2
(0.2) 		17.6
(3) 		14.3
(1.5) 		4.1
(-3) 		4.8
(-2.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.9
(3)
A 		4.3
(-0.4)
A 		1.6
(-3)
A 		2.1
(-2.5)
A 		6
B 8.3
(3)
A 		2.8
(-1.5)
A 		0.9
(-3)
A 		2.3
(-1.9)
A 		7
C 7.7
(3)
A 		7.4
(2.6)
A 		7.1
(2.2)
A 		3
(-3)
A 		5
avr 8
(3) 		4.8
(-0.5) 		3.2
(-2.2) 		2.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		1.1
(-2.7)
A 		6.1
(3)
A 		4.4
(1.1)
A 		1.2
(-2.5)
A 		0.8
(-3)
A 		5
B 2.3
(-1.5)
A 		1.3
(-3)
A 		5.3
(3)
A 		2.6
(-1.1)
A 		2.1
(-1.8)
A 		1.4
(-2.9)
A 		4
C 1.9
(-2.1)
A 		8.1
(3)
A 		0.8
(-3)
A 		3.2
(-1)
A 		1.1
(-2.8)
A 		2.5
(-1.6)
A 		7
avr 1.7
(-2.5) 		3.5
(1.6) 		4.1
(3) 		3.4
(1.4) 		1.5
(-3) 		1.6
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12749
Sequence Type Exemplar sequence
Representative Public ID R08H2.12 NCBI
Target Description R08H2.12 /REP_DB=WormBase Gene ID /WP=CE12616 /TR=O17994 /GB=CAB04637.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R08H2.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15367884:15369411:-1 gene:R08H2.12 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012518 8/11 Cross Hyb Matching Probes None
SNAP00000012520 1/11 Cross Hyb Matching Probes None
R08H2.11 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15368818-15369617(-) 100.0 100.0
Public Domain and Genome References
Ensembl R08H2.12
Sequence
Target Sequence 
>C. ELEGANS:182488_AT
tacaaattcccagttcgcacttggctcaatttattgctttgcctttccaaaccatgtcat
tccacattattcttaccaaaaccccggatagaatgaaaccgatgcgattgccgctatttc
tgaatcacttgttctgtgctttatttgatttctatttatgcacactttcgtgcttataca
ttttcccgccaatgatggcattcactggtcttggactgcttagttggattgggccattcc
tttatcaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAATTCCCAGTTCGCACTTGGC 214 643 95 Antisense
GCTCAATTTATTGCTTTGCCTTTCC 180 303 118 Antisense
CCTTTCCAAACCATGTCATTCCACA 206 269 136 Antisense
GAATGAAACCGATGCGATTGCCGCT 405 331 185 Antisense
ATTGCCGCTATTTCTGAATCACTTG 142 7 201 Antisense
GAATCACTTGTTCTGTGCTTTATTT 530 327 216 Antisense
GATTTCTATTTATGCACACTTTCGT 518 427 241 Antisense
TTTCGTGCTTATACATTTTCCCGCC 271 671 260 Antisense
ATTTTCCCGCCAATGATGGCATTCA 564 13 274 Antisense
TTCACTGGTCTTGGACTGCTTAGTT 487 687 295 Antisense
GGATTGGGCCATTCCTTTATCAGGC 191 507 320 Antisense
Sequence Source Affymetrix Proprietary Database