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[182485_at]

Description C39B5.2 /REP_DB=WormBase Gene ID /WP=CE23578 /TR=Q9N5W7 /GB=AAF39767.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 14.9
(-2.4)
A 		13
(-2.5)
A 		3.4
(-3)
A 		119.8
(3)
A 		116
B 5.4
(-2.7)
A 		6.4
(-2.5)
A 		3.1
(-3)
A 		43.4
(3)
A 		40
C 5.6
(-3)
A 		13.8
(-2.3)
A 		5.4
(-3)
A 		82.7
(3)
A 		77
avr 8.6
(-2.6) 		11.1
(-2.5) 		4
(-3) 		82
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 2.8
(-3)
A 		39.9
(-1.4)
A 		29.4
(-1.9)
A 		39.7
(-1.5)
A 		3.1
(-3)
A 		146.4
(3)
P 		144
B 17.4
(-2.7)
A 		16
(-2.8)
A 		10.4
(-3)
A 		16.7
(-2.7)
A 		23.3
(-2.4)
A 		145.5
(3)
P 		135
C 36.7
(-2)
A 		34.3
(-2.1)
A 		33.1
(-2.2)
A 		8.2
(-3)
A 		11.4
(-2.9)
A 		184.2
(3)
P 		176
avr 19
(-2.7) 		30.1
(-2.3) 		24.3
(-2.5) 		21.5
(-2.6) 		12.6
(-3) 		158.7
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.4
(-1.4)
A 		2.8
(-2.3)
A 		0.9
(-3)
A 		17.5
(3)
A 		17
B 1.7
(-2.3)
A 		1.6
(-2.4)
A 		0.7
(-3)
A 		9.2
(3)
A 		9
C 1.8
(-3)
A 		4
(-1.9)
A 		1.9
(-3)
A 		13.9
(3)
A 		12
avr 3
(-2.1) 		2.8
(-2.2) 		1.2
(-3) 		13.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 0.5
(-3)
A 		14.2
(-0.7)
A 		6.4
(-2)
A 		10.1
(-1.4)
A 		0.9
(-2.9)
A 		35.6
(3)
P 		35
B 6.1
(-2.6)
A 		5.3
(-2.7)
A 		2.5
(-3)
A 		4.4
(-2.8)
A 		9.5
(-2.2)
A 		54.2
(3)
P 		52
C 13.6
(-1.8)
A 		10.5
(-2.1)
A 		8.4
(-2.3)
A 		1.7
(-3)
A 		3.7
(-2.8)
A 		61.7
(3)
P 		60
avr 6.7
(-2.7) 		10
(-2.3) 		5.8
(-2.9) 		5.4
(-2.9) 		4.7
(-3) 		50.5
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8206
Sequence Type Exemplar sequence
Representative Public ID C39B5.2 NCBI
Target Description C39B5.2 /REP_DB=WormBase Gene ID /WP=CE23578 /TR=Q9N5W7 /GB=AAF39767.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065117 NCBI Caenorhabditis elegans C39B5.2 (C39B5.2) mRNA, complete cds. 11/11 None
SNAP00000012611 ENSEMBL cdna:SNAP chromosome:CEL140:III:2234873:2236901:1 11/11 None
GENEFINDER00000012619 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2234873:2243831:1 11/11 None
C39B5.2 ENSEMBL cdna:known chromosome:CEL140:III:2233876:2236906:1 gene:C39B5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2233875-2236901(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B5.2
Entrez Gene 175348 Entrez gene
SwissProt Q9N5W7 EMBL-EBI
WormBase CE23578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39767 Hypothetical protein C39B5.2 [Caenorhabditis elegans] ref|NP_497518.1| C39B5.2 [Caenorhabditis elegans] 0.0
blast AAF39766 Hypothetical protein C39B5.1 [Caenorhabditis elegans] ref|NP_497520.2| Serpentine Receptor, class Z family member (srz-56) [Caenorhabditis elegans] 1.0E-150
blast AAC68969 Serpentine receptor, class z protein 23 [Caenorhabditis elegans] ref|NP_500350.2| Serpentine Receptor, class Z family member (srz-23) [Caenorhabditis elegans] 1.0E-29
blast NP_493870 C32B5.15 [Caenorhabditis elegans] gb|AAB37970.1| Hypothetical protein C32B5.15 [Caenorhabditis elegans] 1.0E-20
blast NP_494379 K12H6.7 [Caenorhabditis elegans] gb|AAF39942.1| Hypothetical protein K12H6.7 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-4
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.9E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012619 7 454-471,478-500,504-521,534-556,571-593,614-636,651-673
Sequence
Target Sequence 
>C. ELEGANS:182485_AT
atagcttccttgacgatgtattcttgaaatgtcccaattcacaagttgcacggatatatg
gtttgattgatagtaggattaaaaaagaatgctgcttgtttgatgtcaaggaacatgaat
gtggagacttgggtccaatggcttatcgaattatgtccatgtttagaggacaacatttgt
ctttaaaggcagtcttaacaacagaacccgtgattagttacttgaaacactgggccagcg
gccggaaacatcagaatattgaaacactggaagtaggtgttgaaggatttgtttcgatgc
gatacgctgggacaacaattcttgaagaattgaaagcaagaccttggaatggtgcgagaa
ggcctaggaattatattttttctaataaaacgcacggaaaaccgcagatcttcgattgtg
taaaatggtttgacattaaaggtgatgggaagctggcttcaattcttgtcggccattccg
attttaaaatggttgtttggaatggctccgctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCTTCCTTGACGATGTATTCTT 179 23 698 Antisense
ATGTCCCAATTCACAAGTTGCACGG 375 49 726 Antisense
GACTTGGGTCCAATGGCTTATCGAA 497 371 823 Antisense
GGCAGTCTTAACAACAGAACCCGTG 376 533 885 Antisense
ACTTGAAACACTGGGCCAGCGGCCG 230 105 917 Antisense
GCCAGCGGCCGGAAACATCAGAATA 702 279 931 Antisense
GATGCGATACGCTGGGACAACAATT 324 413 993 Antisense
GAAAACCGCAGATCTTCGATTGTGT 308 355 1094 Antisense
AAGCTGGCTTCAATTCTTGTCGGCC 556 149 1147 Antisense
AATTCTTGTCGGCCATTCCGATTTT 576 175 1158 Antisense
TGGTTGTTTGGAATGGCTCCGCTAC 469 551 1187 Antisense
Sequence Source Affymetrix Proprietary Database