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[182483_s_at]

Description T20F7.1 /REP_DB=WormBase Gene ID /WP=CE13830 /TR=O02170 /GB=AAK18977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 56      4grp_total > 23      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 305.5
(3)
P 		190.2
(-3)
P 		291.3
(2.3)
P 		265
(0.9)
P 		115
B 382.4
(3)
P 		263.2
(-2.6)
P 		254.8
(-3)
P 		343.5
(1.2)
P 		128
C 357
(3)
P 		231.6
(-3)
P 		246
(-2.3)
P 		320
(1.2)
P 		125
avr 348.3
(3) 		228.3
(-3) 		264
(-1.2) 		309.5
(1.1) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 305.4
(1.6)
P 		278.5
(0.4)
P 		264.8
(-0.3)
P 		231.2
(-1.8)
P 		206.1
(-3)
P 		334.5
(3)
P 		128
B 300.1
(0.6)
P 		266.3
(-1.2)
P 		230.1
(-3)
P 		230.5
(-3)
P 		251.8
(-1.9)
P 		348
(3)
P 		118
C 235.3
(-1)
P 		282.5
(1.4)
P 		307.6
(2.7)
P 		224.5
(-1.5)
P 		194.3
(-3)
P 		314.4
(3)
P 		120
avr 280.3
(0.3) 		275.8
(0) 		267.5
(-0.4) 		228.7
(-2.4) 		217.4
(-3) 		332.3
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 111.2
(3)
P 		41.3
(-2.8)
P 		76.2
(0.1)
P 		38.8
(-3)
P 		72
B 121.9
(3)
P 		65
(-2.4)
P 		59
(-3)
P 		73.2
(-1.6)
P 		63
C 118.2
(3)
P 		66.6
(-1.8)
P 		85.7
(-0)
P 		54
(-3)
P 		64
avr 117.1
(3) 		57.6
(-2.8) 		73.6
(-1.2) 		55.3
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 56.3
(-3)
P 		99.1
(3)
P 		57.7
(-2.8)
P 		58.6
(-2.7)
P 		62.2
(-2.2)
P 		81.4
(0.5)
P 		43
B 104.4
(0.9)
P 		88.6
(-0.3)
P 		55.9
(-3)
P 		61.1
(-2.6)
P 		102.3
(0.8)
P 		129.8
(3)
P 		74
C 87.2
(1.2)
P 		86.2
(1.1)
P 		78.3
(0.3)
P 		45.2
(-3)
P 		62.9
(-1.2)
P 		105.2
(3)
P 		60
avr 82.6
(0.3) 		91.3
(1.3) 		64
(-1.9) 		55
(-3) 		75.8
(-0.5) 		105.5
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182483_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17769
Sequence Type Exemplar sequence
Representative Public ID T20F7.1 NCBI
Target Description T20F7.1 /REP_DB=WormBase Gene ID /WP=CE13830 /TR=O02170 /GB=AAK18977.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078326 NCBI Caenorhabditis elegans T20F7.1 (T20F7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000037357 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16872839:16877955:1 11/11 None
SNAP00000037350 ENSEMBL cdna:SNAP chromosome:CEL140:X:16876884:16877955:1 11/11 None
T20F7.1 ENSEMBL cdna:known chromosome:CEL140:X:16872839:16878200:1 gene:T20F7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16876568-16877955(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F7.1
Entrez Gene 181737 Entrez gene
SwissProt O02169 EMBL-EBI
WormBase CE33698 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18978 Hypothetical protein T20F7.1 [Caenorhabditis elegans] ref|NP_510727.2| T20F7.1 [Caenorhabditis elegans] 0.0
blast CAE71004 Hypothetical protein CBG17840 [Caenorhabditis briggsae] 1.0E-130
blast CAE71004 Hypothetical protein CBG17840 [Caenorhabditis briggsae] 1.0E-129
blast T25901 hypothetical protein T20F7.1 - Caenorhabditis elegans 1.0E-109
blast T25901 hypothetical protein T20F7.1 - Caenorhabditis elegans 4.0E-98
blast AAK18978 Hypothetical protein T20F7.1 [Caenorhabditis elegans] ref|NP_510727.2| T20F7.1 [Caenorhabditis elegans] 4.0E-95
Sequence
Target Sequence 
>C. ELEGANS:182483_S_AT
aatcgtccagtttatccagttgtcaaggcgaaactggctcgctgtcgttttccggttgtc
gacaagccacttgtcgaaaaacaatttgatgttgaggctcgaacagctgcttatcaagaa
tacagagaagaatgcgagcaagaacatgcagttaatacatacgaggaagtggttgaggaa
gatggattgttccacgttccggcaacaccaggcattgaagtatacgatgagagtgagaag
gcgctggaagttactgaaaagaaagaagaacctgttgaacctcttaccgagactccaaca
aagaccaggggacgtagaaagacgaccgctgatgaagttgccgtaccagctgaaagtgaa
aaagtccctgctccacaagaaatggaagagaccgctgagcaagttgggtctccaacaata
ccaattggaaggaataccgcaaggaaaaatgcagcaaagaaagtgaagatcgacacatca
attgtagtacagagtgatgaagatatggaacacgtggcagaagagattattgaagaaaca
acttcatgcaatgtcatcgtcagcccaactcgtgcatcttatcgtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTCCAGTTTATCCAGTTGTCA 77 169 127 Antisense
CAAGGCGAAACTGGCTCGCTGTCGT 530 183 150 Antisense
CGCTGTCGTTTTCCGGTTGTCGACA 174 245 166 Antisense
GTTGAGGCTCGAACAGCTGCTTATC 156 439 217 Antisense
AAGATGGATTGTTCCACGTTCCGGC 622 153 305 Antisense
TTGAACCTCTTACCGAGACTCCAAC 263 659 401 Antisense
CGACCGCTGATGAAGTTGCCGTACC 280 249 449 Antisense
AAGTGAAAAAGTCCCTGCTCCACAA 331 157 480 Antisense
ACCGCTGAGCAAGTTGGGTCTCCAA 659 89 517 Antisense
TTCATGCAATGTCATCGTCAGCCCA 348 689 669 Antisense
CCAACTCGTGCATCTTATCGTTTGA 529 275 691 Antisense
Sequence Source Affymetrix Proprietary Database