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[182482_at]

Description K09F5.4 /REP_DB=WormBase Gene ID /WP=CE02821 /TR=Q21402 /GB=AAB52673.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 24.9
(-3)
A 		29.2
(-2.3)
A 		60.3
(3)
A 		59.9
(2.9)
A 		35
B 61.2
(3)
A 		32.3
(-3)
A 		33.4
(-2.8)
A 		48.5
(0.4)
A 		29
C 24.8
(-3)
A 		30.5
(-2)
A 		34
(-1.4)
A 		60
(3)
A 		35
avr 37
(-1.5) 		30.7
(-3) 		42.6
(-0.2) 		56.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 62.7
(3)
A 		24
(-3)
A 		23.7
(-3)
A 		28.6
(-2.2)
A 		49
(0.9)
A 		30.2
(-2)
A 		39
B 109.5
(3)
A 		54.8
(-0.7)
A 		29.5
(-2.3)
A 		39.6
(-1.7)
A 		21.2
(-2.9)
A 		19.7
(-3)
A 		90
C 32.6
(-1.9)
A 		66.5
(3)
A 		24.7
(-3)
A 		44
(-0.2)
A 		25.8
(-2.8)
A 		37.8
(-1.1)
A 		42
avr 68.3
(3) 		48.4
(0.2) 		26
(-3) 		37.4
(-1.4) 		32
(-2.1) 		29.2
(-2.5) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(-1.3)
A 		6.3
(-3)
A 		15.8
(3)
A 		8.8
(-1.4)
A 		10
B 19.5
(3)
A 		8
(-2.8)
A 		7.7
(-3)
A 		10.3
(-1.7)
A 		12
C 8.2
(-3)
A 		8.8
(-2)
A 		11.9
(3)
A 		10.1
(0.1)
A 		4
avr 12.2
(3) 		7.7
(-3) 		11.8
(2.5) 		9.7
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11.6
(1)
A 		8.5
(-0.9)
A 		5.2
(-3)
A 		7.2
(-1.8)
A 		14.8
(3)
A 		7.4
(-1.6)
A 		10
B 38.1
(3)
A 		18.2
(-0.9)
A 		7.2
(-3)
A 		10.5
(-2.4)
A 		8.6
(-2.7)
A 		7.3
(-3)
A 		31
C 12.1
(-0.5)
A 		20.3
(3)
A 		6.3
(-3)
A 		8.8
(-1.9)
A 		8.3
(-2.1)
A 		12.7
(-0.3)
A 		14
avr 20.6
(3) 		15.7
(1) 		6.2
(-3) 		8.8
(-1.9) 		10.6
(-1.2) 		9.1
(-1.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17009
Sequence Type Exemplar sequence
Representative Public ID K09F5.4 NCBI
Target Description K09F5.4 /REP_DB=WormBase Gene ID /WP=CE02821 /TR=Q21402 /GB=AAB52673.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076901 NCBI Caenorhabditis elegans K09F5.4 (K09F5.4) mRNA, complete cds. 11/11 None
K09F5.4 ENSEMBL cdna:known chromosome:CEL140:X:7710109:7710655:-1 gene:K09F5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7710107-7710654(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09F5.4
Entrez Gene 187228 Entrez gene
SwissProt Q21402 EMBL-EBI
WormBase CE02821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509302 K09F5.4 [Caenorhabditis elegans] gb|AAB52673.1| Hypothetical protein K09F5.4 [Caenorhabditis elegans] 8.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509302.1 1 28-50
K09F5.4 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:182482_AT
aggagggggcacacaacacaataataaattctgaaatgagatcgacagaaaagagcgaga
agcgtccaccgcctttcggaatgaatatgtttttctttagcatccccctcaaagctatgt
ttcttttttttgcgtgcatgataccaactggacatcaagggagaaataacgtgggggggg
gggggggaacacgtgcccttcttttccactgcccaatgtcacagaagagtctttcactca
ctttctttctcacacacacacaactcacacgccagccaccctcacacccggctcacttca
acaataagtgggtgagcaccgcctccatgggtgagattttgctattcgagagtggaaaac
gaagaaaggagggggaacatgtcaacgggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGGGGGCACACAACACAATAAT 219 57 20 Antisense
CGTCCACCGCCTTTCGGAATGAATA 21 245 82 Antisense
GAATATGTTTTTCTTTAGCATCCCC 143 327 102 Antisense
ATCCCCCTCAAAGCTATGTTTCTTT 661 35 121 Antisense
TTGCGTGCATGATACCAACTGGACA 155 703 149 Antisense
TTCCACTGCCCAATGTCACAGAAGA 580 699 223 Antisense
AAGAGTCTTTCACTCACTTTCTTTC 601 153 244 Antisense
CACCCGGCTCACTTCAACAATAAGT 376 201 304 Antisense
AATAAGTGGGTGAGCACCGCCTCCA 669 169 322 Antisense
ACCGCCTCCATGGGTGAGATTTTGC 421 89 337 Antisense
GGAGGGGGAACATGTCAACGGGAAG 552 201 387 Antisense
Sequence Source Affymetrix Proprietary Database