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[182481_at]

Description F35D2.1 /REP_DB=WormBase Gene ID /WP=CE02723 /TR=Q20045 /GB=AAA68327.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 45.6
(-3)
A 		135
(0.1)
P 		221.4
(3)
P 		138
(0.2)
P 		176
B 39.1
(-3)
A 		206.6
(2)
P 		239.3
(3)
P 		68.2
(-2.1)
P 		200
C 26
(-3)
A 		167
(1.4)
P 		219.8
(3)
P 		129.4
(0.2)
P 		194
avr 36.9
(-3) 		169.5
(1.2) 		226.8
(3) 		111.9
(-0.6) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 54.5
(-2.9)
A 		182.9
(3)
P 		176.1
(2.7)
P 		151.3
(1.5)
P 		169.6
(2.4)
P 		53.3
(-3)
A 		130
B 42.1
(-3)
A 		184.9
(3)
P 		110.7
(-0.1)
P 		151.7
(1.6)
P 		137.9
(1)
P 		53.4
(-2.5)
A 		143
C 29.5
(-3)
A 		175.1
(3)
P 		118.6
(0.7)
P 		155
(2.2)
P 		156.5
(2.2)
P 		48.4
(-2.2)
A 		146
avr 42
(-3) 		181
(3) 		135.1
(1) 		152.7
(1.8) 		154.7
(1.9) 		51.7
(-2.6) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 16.6
(-3)
A 		29.3
(-1.2)
P 		57.9
(3)
P 		20.2
(-2.5)
P 		41
B 12.5
(-3)
A 		51
(2.4)
P 		55.5
(3)
P 		14.5
(-2.7)
P 		43
C 8.6
(-3)
A 		48
(0.5)
P 		76.6
(3)
P 		21.8
(-1.8)
P 		68
avr 12.6
(-3) 		42.8
(0.6) 		63.3
(3) 		18.8
(-2.3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 10.1
(-3)
A 		65
(3)
P 		38.3
(0.1)
P 		38.4
(0.1)
P 		51.2
(1.5)
P 		13
(-2.7)
A 		55
B 14.7
(-3)
A 		61.6
(3)
P 		26.9
(-1.4)
P 		40.2
(0.3)
P 		56
(2.3)
P 		19.9
(-2.3)
A 		47
C 10.9
(-3)
A 		53.4
(3)
P 		30.2
(-0.3)
P 		31.2
(-0.1)
P 		50.6
(2.6)
P 		16.2
(-2.3)
A 		43
avr 11.9
(-3) 		60
(3) 		31.8
(-0.5) 		36.6
(0.1) 		52.6
(2.1) 		16.4
(-2.4) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5395
Sequence Type Exemplar sequence
Representative Public ID F35D2.1 NCBI
Target Description F35D2.1 /REP_DB=WormBase Gene ID /WP=CE02723 /TR=Q20045 /GB=AAA68327.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063189 NCBI Caenorhabditis elegans F35D2.1 (F35D2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000006823 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7574373:7580166:1 11/11 None
F35D2.1 ENSEMBL cdna:known chromosome:CEL140:II:7575852:7578634:1 gene:F35D2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006814 6/11 Cross Hyb Matching Probes None
SNAP00000006815 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7575848-7578631(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D2.1
Entrez Gene 185276 Entrez gene
SwissProt Q20045 EMBL-EBI
WormBase CE02723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68327 Hypothetical protein F35D2.1 [Caenorhabditis elegans] ref|NP_495590.1| F35D2.1 [Caenorhabditis elegans] 0.0
blast AAA68326 Hypothetical protein F35D2.2 [Caenorhabditis elegans] ref|NP_495589.2| F35D2.2 [Caenorhabditis elegans] 0.0
blast CAE67492 Hypothetical protein CBG13000 [Caenorhabditis briggsae] 1.0E-170
blast CAE67493 Hypothetical protein CBG13001 [Caenorhabditis briggsae] 1.0E-158
blast AAA68327 Hypothetical protein F35D2.1 [Caenorhabditis elegans] ref|NP_495590.1| F35D2.1 [Caenorhabditis elegans] 6.0E-80
blast AAA68326 Hypothetical protein F35D2.2 [Caenorhabditis elegans] ref|NP_495589.2| F35D2.2 [Caenorhabditis elegans] 4.0E-47
Sequence
Target Sequence 
>C. ELEGANS:182481_AT
ttgacgtggctattccaatgtctaagggagttgcttatagatttccattctctggaaact
tgtactttactcgagacaatgtcacagttcactatgggcataatttgtcacctattgatc
catttggcagtttatttgattatcaaaagaacagagatccagttcttaaaaatttgattc
cgagaagatggccgagaagcattcaggagccaacagaagctccagttcatcgacacatgg
gtgcagtgtatccaccttctcaacaaataagaatgggtcgcccgatctgtttccgatgtc
ttactccaattttactgtctcaaaatgttcttcagttggcacatcaatatgaagaaaact
gctatgaaaccgaaaaagaagcgaaaatgacatgcttcgactcggctcttgtaactattt
cagatggaaatttattgttccgaacttctgatgagcaagcagcaagttgtagtccgattg
atggaagatttgatgtatcttaccgtatgaatgatgctgctctcagttgtgaatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACGTGGCTATTCCAATGTCTAA 418 705 464 Antisense
GTTGCTTATAGATTTCCATTCTCTG 565 439 493 Antisense
GACAATGTCACAGTTCACTATGGGC 26 363 538 Antisense
GTCACCTATTGATCCATTTGGCAGT 625 465 570 Antisense
AACAGAAGCTCCAGTTCATCGACAC 268 137 675 Antisense
ATGGGTGCAGTGTATCCACCTTCTC 22 51 700 Antisense
AAGAATGGGTCGCCCGATCTGTTTC 206 153 732 Antisense
GTCTTACTCCAATTTTACTGTCTCA 484 467 761 Antisense
AAAATGACATGCTTCGACTCGGCTC 550 133 847 Antisense
GACTCGGCTCTTGTAACTATTTCAG 96 373 862 Antisense
GATGCTGCTCTCAGTTGTGAATCTG 134 415 976 Antisense
Sequence Source Affymetrix Proprietary Database