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[182480_at]

Description K10D11.3 /REP_DB=WormBase Gene ID /WP=CE16240 /TR=O17946 /GB=CAB03522.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 55      6grp_total > 34      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 104.2
(0.3)
P 		34
(-3)
A 		38.7
(-2.8)
A 		163.4
(3)
P 		129
B 75
(-0.3)
M 		55.4
(-3)
A 		99.3
(3)
A 		56.4
(-2.9)
P 		44
C 95.1
(3)
P 		57.5
(-2.2)
M 		51.7
(-3)
M 		75.3
(0.3)
M 		43
avr 91.4
(2.1) 		49
(-3) 		63.2
(-1.3) 		98.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 94.8
(-0.1)
P 		93
(-0.2)
P 		143.1
(3)
P 		94.2
(-0.1)
P 		95.8
(0)
P 		48.5
(-3)
A 		95
B 96.7
(3)
P 		79.1
(0.1)
P 		89.2
(1.8)
P 		85
(1.1)
P 		63
(-2.6)
P 		60.5
(-3)
A 		36
C 99
(2.1)
P 		111.7
(3)
P 		79.7
(0.8)
P 		47.8
(-1.4)
A 		24.4
(-3)
A 		101.5
(2.3)
P 		87
avr 96.8
(2) 		94.6
(1.7) 		104
(3) 		75.7
(-1) 		61.1
(-3) 		70.2
(-1.7) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 37.9
(3)
P 		7.4
(-3)
A 		10.1
(-2.5)
A 		23.9
(0.2)
P 		31
B 23.9
(3)
M 		13.7
(-2.1)
A 		23
(2.5)
A 		12
(-3)
P 		12
C 31.5
(3)
P 		16.5
(-1.8)
M 		18
(-1.3)
M 		12.7
(-3)
M 		19
avr 31.1
(3) 		12.5
(-3) 		17
(-1.5) 		16.2
(-1.8) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.5
(-1.4)
P 		33.1
(3)
P 		31.2
(2.5)
P 		23.9
(0.4)
P 		28.9
(1.8)
P 		11.8
(-3)
A 		21
B 33.7
(3)
P 		26.3
(-0.7)
P 		21.7
(-3)
P 		22.5
(-2.6)
P 		25.6
(-1.1)
P 		22.5
(-2.6)
A 		12
C 36.7
(3)
P 		34.1
(2.5)
P 		20.3
(-0.4)
P 		9.6
(-2.6)
A 		7.9
(-3)
A 		34
(2.4)
P 		29
avr 29.3
(2.1) 		31.2
(3) 		24.4
(-0.3) 		18.7
(-3) 		20.8
(-2) 		22.8
(-1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9754
Sequence Type Exemplar sequence
Representative Public ID K10D11.3 NCBI
Target Description K10D11.3 /REP_DB=WormBase Gene ID /WP=CE16240 /TR=O17946 /GB=CAB03522.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070087(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070087 NCBI Caenorhabditis elegans K10D11.3 (K10D11.3) mRNA, complete cds. 10/11 None
SNAP00000011397 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12982177:12985739:-1 9/11 None
GENEFINDER00000011406 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12982177:12989335:-1 9/11 None
K10D11.3 ENSEMBL cdna:known chromosome:CEL140:IV:12982130:12984371:-1 gene:K10D11.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12982069-12984377(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D11.3
Entrez Gene 187268 Entrez gene
SwissProt O17946 EMBL-EBI
WormBase CE32908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03522 Hypothetical protein K10D11.3 [Caenorhabditis elegans] ref|NP_502488.2| K10D11.3 [Caenorhabditis elegans] 0.0
blast CAB03525 Hypothetical protein K10D11.6 [Caenorhabditis elegans] ref|NP_502489.1| K10D11.6 [Caenorhabditis elegans] 0.0
blast CAB03525 Hypothetical protein K10D11.6 [Caenorhabditis elegans] ref|NP_502489.1| K10D11.6 [Caenorhabditis elegans] 1.0E-158
blast CAB03525 Hypothetical protein K10D11.6 [Caenorhabditis elegans] ref|NP_502489.1| K10D11.6 [Caenorhabditis elegans] 3.0E-87
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 2.0E-57
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 2.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 8.3E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.8E-13
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 8.3E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-37
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.4E-8
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.8E-13
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 8.3E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011406 2 326-348,511-530
Sequence
Target Sequence 
>C. ELEGANS:182480_AT
cttggcaaatggaacggcactggtcgagcttgcggaagattctaatttcactcggtggaa
tgacgcgtcagacgggagacaaggattcataagttctagaagatatggaaaacttgattt
cttccaagatgtcaaggaggaaattggaggattggattctaatcaaacgttttcatttga
aatcaatgtaatccgcctcgatgtttcaaattctgcagaattctccaaagaaaataatta
tcaatccagagtatttcaaggaattggtagaaatatgacagtgcaatataattcgaacgg
tgaagaaactagcggattctatttgcacttcaaaatcgaggctcacaacgggtgcccagg
aaattgtaagttttgccaacaattcaataatttgaatttacattttagatttcaccatga
ctgcatttttattattatttcttccactgttatattgaaaacgtcgacaactcacaccta
ctggtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGCAAATGGAACGGCACTGGTC 710 201 936 Antisense
GGCACTGGTCGAGCTTGCGGAAGAT 344 535 951 Antisense
GGAAGATTCTAATTTCACTCGGTGG 504 531 969 Antisense
CACTCGGTGGAATGACGCGTCAGAC 399 193 984 Antisense
TTGAAATCAATGTAATCCGCCTCGA 615 703 1112 Antisense
TCCGCCTCGATGTTTCAAATTCTGC 692 595 1127 Antisense
TAGCGGATTCTATTTGCACTTCAAA 69 653 1245 Antisense
AAATCGAGGCTCACAACGGGTGCCC 491 113 1268 Antisense
GATTTCACCATGACTGCATTTTTAT 83 429 1343 Antisense
TATTATTATTTCTTCCACTGTTATA 405 663 1365 Antisense
TCGACAACTCACACCTACTGGTATA 570 601 1399 Antisense
Sequence Source Affymetrix Proprietary Database