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[182479_at]

Description B0454.5 /REP_DB=WormBase Gene ID /WP=CE07755 /TR=O17168 /GB=AAB70939.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 74      6grp_total > 64      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 633
1 2 3 4 range
A 15.9
(-3)
A 		292.6
(-0.2)
P 		349.9
(0.4)
P 		599.6
(3)
P 		584
B 31.9
(-3)
A 		309.5
(-0.3)
M 		459.4
(1.2)
P 		649
(3)
P 		617
C 44.1
(-3)
A 		207.6
(-1.3)
A 		403
(0.8)
P 		606.6
(3)
P 		563
avr 30.6
(-3) 		269.9
(-0.6) 		404.1
(0.8) 		618.4
(3) 		588

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 586
1 2 3 4 5 6 range
A 107.7
(-3)
A 		274
(-1.2)
P 		664.5
(3)
P 		352.8
(-0.4)
P 		356
(-0.3)
P 		432.5
(0.5)
P 		557
B 111.6
(-3)
P 		419.1
(0.5)
P 		642.8
(3)
P 		548.7
(1.9)
P 		423.9
(0.5)
P 		548.8
(1.9)
P 		531
C 159
(-3)
A 		391.6
(-0.4)
P 		480.1
(0.6)
P 		693.2
(3)
P 		303.1
(-1.4)
P 		560.2
(1.5)
P 		534
avr 126.1
(-3) 		361.6
(0) 		595.8
(3) 		531.6
(2.2) 		361
(0) 		513.8
(2) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 5.8
(-3)
A 		63.5
(1)
P 		91.5
(3)
P 		87.8
(2.7)
P 		86
B 10.2
(-3)
A 		76.4
(0.1)
M 		106.5
(1.5)
P 		138.3
(3)
P 		128
C 14.6
(-3)
A 		59.7
(-0.9)
A 		140.5
(3)
P 		102.3
(1.2)
P 		126
avr 10.2
(-3) 		66.5
(0.3) 		112.8
(3) 		109.5
(2.8) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 19.9
(-3)
A 		97.5
(0.7)
P 		144.7
(3)
P 		89.5
(0.3)
P 		107.4
(1.2)
P 		105.3
(1.1)
P 		125
B 38.8
(-3)
P 		139.5
(0.6)
P 		156.1
(1.2)
P 		145.3
(0.9)
P 		172.2
(1.8)
P 		204.7
(3)
P 		166
C 58.9
(-3)
A 		119.5
(-0.2)
P 		122.2
(-0)
P 		139.4
(0.8)
P 		98.1
(-1.2)
P 		187.5
(3)
P 		129
avr 39.2
(-3) 		118.8
(0.8) 		141
(1.8) 		124.7
(1.1) 		125.9
(1.1) 		165.8
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4891
Sequence Type Exemplar sequence
Representative Public ID B0454.5 NCBI
Target Description B0454.5 /REP_DB=WormBase Gene ID /WP=CE07755 /TR=O17168 /GB=AAB70939.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062028 NCBI Caenorhabditis elegans B0454.5 (B0454.5) mRNA, complete cds. 11/11 None
GENEFINDER00000034465 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3038858:3040801:1 11/11 None
B0454.5 ENSEMBL cdna:known chromosome:CEL140:II:3038854:3040801:1 gene:B0454.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034450 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3036611-3040800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0454.5
Entrez Gene 181992 Entrez gene
SwissProt O17168 EMBL-EBI
WormBase CE37697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70939 Hypothetical protein B0454.5 [Caenorhabditis elegans] ref|NP_494429.2| B0454.5 [Caenorhabditis elegans] 1.0E-101
blast CAE72455 Hypothetical protein CBG19627 [Caenorhabditis briggsae] 5.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494429.2 4 51-70,80-99,135-157,172-194
B0454.5 4 51-70,80-99,135-157,172-194
GENEFINDER00000034465 4 51-70,80-99,135-157,172-194
Sequence
Target Sequence 
>C. ELEGANS:182479_AT
aagtccgacctagttgggctggagaatggcggctcaattgagccagatatacagaaaacg
aaatttcttacaaagaccaatcgggcaatggacaaggccttgacgaaatcttcattcgat
gaggaaatggatgaggagatggcatcgggctgcaatatcattttcacggtactcaatatt
tgcctcgtcatcttcggcttggcgcgacgcgaagaatgtgacgggcaaccgatgatccca
gtttttattattgttttggggtgtttatggctggcgaaggatgctatcgagaggttgaga
cgacgatatcaacgaaaacgtgaatccccgctaccatccgacgacggagagctcagggat
gccacaggaagatccgggttcccatatccttgcggctacattcacgtgctcctgaatatc
ctaatttttgtttggtgcatattcggctgctactgggtgttcggctcatggacggcccgt
gcctactgcgactggtggacctacaatattgccacgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCCGACCTAGTTGGGCTGGAGA 162 157 274 Antisense
CGGGCTGCAATATCATTTTCACGGT 326 241 419 Antisense
TCAATATTTGCCTCGTCATCTTCGG 54 635 446 Antisense
GACGGGCAACCGATGATCCCAGTTT 627 377 493 Antisense
GTTTTGGGGTGTTTATGGCTGGCGA 351 447 526 Antisense
GAGAGCTCAGGGATGCCACAGGAAG 530 393 620 Antisense
CAGGAAGATCCGGGTTCCCATATCC 210 207 638 Antisense
TCACGTGCTCCTGAATATCCTAATT 75 627 675 Antisense
CATATTCGGCTGCTACTGGGTGTTC 399 213 711 Antisense
CCTACTGCGACTGGTGGACCTACAA 7 269 755 Antisense
GGACCTACAATATTGCCACGTTTTT 397 517 770 Antisense
Sequence Source Affymetrix Proprietary Database