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[182478_at]

Description C04A11.1 /REP_DB=WormBase Gene ID /WP=CE23516 /TR=O17567 /GB=CAB03830.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 16      4grp_total > 19      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 172.5
(-1.2)
P 		227.4
(1.3)
P 		133.1
(-3)
P 		263.2
(3)
P 		130
B 154.2
(-1.4)
P 		176.4
(-0.7)
P 		106.6
(-3)
P 		289.5
(3)
P 		183
C 135.2
(-3)
P 		146.5
(-2.5)
P 		147.7
(-2.4)
P 		260.7
(3)
P 		126
avr 154
(-1.9) 		183.4
(-0.7) 		129.1
(-3) 		271.1
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 191.3
(3)
P 		127.1
(-0.5)
P 		81
(-3)
P 		127.8
(-0.5)
P 		92.7
(-2.4)
P 		108.2
(-1.5)
P 		110
B 186.8
(3)
P 		155.8
(1.3)
P 		125.2
(-0.5)
P 		92.5
(-2.3)
P 		140.1
(0.4)
P 		80.2
(-3)
P 		107
C 137.8
(-0.2)
P 		179.6
(3)
P 		114.3
(-2.1)
P 		115.8
(-1.9)
P 		102.2
(-3)
P 		125
(-1.2)
P 		77
avr 172
(3) 		154.2
(1.4) 		106.8
(-2.8) 		112
(-2.3) 		111.7
(-2.4) 		104.5
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 62.8
(3)
P 		49.4
(0.1)
P 		34.8
(-3)
P 		38.5
(-2.2)
P 		28
B 49.2
(1)
P 		43.6
(0.1)
P 		24.7
(-3)
P 		61.7
(3)
P 		37
C 44.8
(-1.3)
P 		42.1
(-3)
P 		51.5
(3)
P 		44
(-1.8)
P 		9
avr 52.3
(3) 		45
(0.1) 		37
(-3) 		48.1
(1.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 35.3
(0.8)
P 		45.2
(3)
P 		17.6
(-3)
P 		32.4
(0.2)
P 		28
(-0.7)
P 		26.3
(-1.1)
P 		28
B 65
(3)
P 		51.8
(1)
P 		30.4
(-2.1)
P 		24.5
(-3)
P 		56.9
(1.8)
P 		29.9
(-2.2)
P 		41
C 51.1
(2.3)
P 		54.8
(3)
P 		29.1
(-1.9)
P 		23.3
(-3)
P 		33.1
(-1.1)
P 		41.8
(0.5)
P 		32
avr 50.5
(3) 		50.6
(3) 		25.7
(-3) 		26.7
(-2.8) 		39.3
(0.3) 		32.7
(-1.3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18029
Sequence Type Exemplar sequence
Representative Public ID C04A11.1 NCBI
Target Description C04A11.1 /REP_DB=WormBase Gene ID /WP=CE23516 /TR=O17567 /GB=CAB03830.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077887 NCBI Caenorhabditis elegans C04A11.1 (C04A11.1) mRNA, complete cds. 11/11 None
SNAP00000007387 ENSEMBL cdna:SNAP chromosome:CEL140:X:13660466:13662419:1 9/11 None
GENEFINDER00000007393 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13660466:13662419:1 11/11 None
C04A11.1 ENSEMBL cdna:known chromosome:CEL140:X:13660438:13662882:1 gene:C04A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13660465-13662419(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04A11.1
Entrez Gene 181486 Entrez gene
SwissProt O17567 EMBL-EBI
WormBase CE23516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03830 Hypothetical protein C04A11.1 [Caenorhabditis elegans] ref|NP_510288.1| C04A11.1 [Caenorhabditis elegans] 7.0E-78
blast CAE63104 Hypothetical protein CBG07396 [Caenorhabditis briggsae] 1.0E-72
blast CAB03830 Hypothetical protein C04A11.1 [Caenorhabditis elegans] ref|NP_510288.1| C04A11.1 [Caenorhabditis elegans] 4.0E-64
blast CAE63104 Hypothetical protein CBG07396 [Caenorhabditis briggsae] 6.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510288.1 1 24-46
C04A11.1 1 24-46
SNAP00000007387 1 24-46
GENEFINDER00000007393 1 24-46
Sequence
Target Sequence 
>C. ELEGANS:182478_AT
tgctctctgtcgtaatctgggtggccttctgtgtggccgtccgaaaaacggcgcgtaaat
tcattgaactgaaaaggcaaagacgaagacaggcacttttaacagcagcaatcaaccgag
cagcttcgacaaatgaagcggaccgtcataatgtacttccgatatacataacaacattgg
cacacgagcttaatgtattcggagcaagagaagaagagctaccaacttatgaagaggcac
tttctatgagttgcacgcctagtccgaatccagttgttacaacttcgaatcgagatcgcg
tgcccccatacaagccacggtctggaaagtcgggcggccgagtgctcagaatcgctccgg
accgtcctggttcaattccaacaatagttctaccgccaagctacgagagctctgtccgtc
atgaagcaatgctttcgccgagaatacattcatcgccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTCTGTCGTAATCTGGGTGGC 693 579 110 Antisense
CTTCTGTGTGGCCGTCCGAAAAACG 417 215 135 Antisense
GCAGCAATCAACCGAGCAGCTTCGA 606 313 214 Antisense
GGCACTTTCTATGAGTTGCACGCCT 583 535 345 Antisense
GCCTAGTCCGAATCCAGTTGTTACA 440 279 366 Antisense
AACTTCGAATCGAGATCGCGTGCCC 533 137 390 Antisense
GCCACGGTCTGGAAAGTCGGGCGGC 404 279 423 Antisense
ACCGTCCTGGTTCAATTCCAACAAT 598 83 470 Antisense
GTTCTACCGCCAAGCTACGAGAGCT 543 443 496 Antisense
AGAGCTCTGTCCGTCATGAAGCAAT 612 69 515 Antisense
CGCCGAGAATACATTCATCGCCGGT 322 255 545 Antisense
Sequence Source Affymetrix Proprietary Database