[Home] | [Total List]

[182477_s_at]

Description K10D2.2 /REP_DB=WormBase Gene ID /WP=CE27429 /TR=Q09408 /GB=AAA62540.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 166.5
(-1.7)
P 		102.9
(-3)
P 		130.7
(-2.4)
P 		393.6
(3)
P 		291
B 192.3
(-1.5)
P 		183.9
(-1.7)
P 		112.9
(-3)
P 		433.3
(3)
P 		320
C 163.6
(-2.4)
P 		179.9
(-2.1)
P 		121.3
(-3)
P 		533.4
(3)
P 		412
avr 174.1
(-2.1) 		155.6
(-2.4) 		121.6
(-3) 		453.4
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 155.3
(-0.5)
P 		93.6
(-3)
P 		217.3
(1.9)
P 		137.4
(-1.3)
P 		244.3
(3)
P 		205
(1.4)
P 		151
B 187
(-0.6)
P 		149.5
(-1.7)
P 		109.6
(-3)
P 		213.4
(0.3)
P 		284.2
(2.5)
P 		300.5
(3)
P 		191
C 82.1
(-3)
P 		197.2
(0.4)
P 		104.9
(-2.3)
P 		231.4
(1.4)
P 		150.4
(-1)
P 		285.7
(3)
P 		204
avr 141.5
(-3) 		146.8
(-2.7) 		143.9
(-2.9) 		194.1
(-0.4) 		226.3
(1.2) 		263.7
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 60.6
(3)
P 		22.3
(-3)
P 		34.2
(-1.1)
P 		57.6
(2.5)
P 		38
B 61.3
(0.2)
P 		45.4
(-1.3)
P 		26.2
(-3)
P 		92.3
(3)
P 		66
C 54.2
(-1.5)
P 		51.7
(-1.8)
P 		42.3
(-3)
P 		89.9
(3)
P 		48
avr 58.7
(0.2) 		39.8
(-2.3) 		34.2
(-3) 		79.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 28.6
(-3)
P 		33.3
(-2.4)
P 		47.3
(-0.5)
P 		34.8
(-2.2)
P 		73.7
(3)
P 		49.9
(-0.2)
P 		45
B 65.1
(-0.4)
P 		49.8
(-1.4)
P 		26.6
(-3)
P 		56.5
(-1)
P 		115.5
(3)
P 		112.1
(2.8)
P 		89
C 30.4
(-2.7)
P 		60.2
(-0.1)
P 		26.7
(-3)
P 		46.5
(-1.3)
P 		48.7
(-1.1)
P 		95.7
(3)
P 		69
avr 41.4
(-2.1) 		47.8
(-1.4) 		33.5
(-3) 		45.9
(-1.6) 		79.3
(2.2) 		85.9
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182477_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6469
Sequence Type Exemplar sequence
Representative Public ID K10D2.2 NCBI
Target Description K10D2.2 /REP_DB=WormBase Gene ID /WP=CE27429 /TR=Q09408 /GB=AAA62540.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064913(11), NM_065699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064913 NCBI Caenorhabditis elegans Y34F4.3 (Y34F4.3) mRNA, complete cds. 11/11 A 
NM_065699 NCBI Caenorhabditis elegans K10D2.2 (K10D2.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000027781 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1015014:1016278:-1 11/11 None
SNAP00000027777 ENSEMBL cdna:SNAP chromosome:CEL140:III:1015671:1023485:-1 11/11 None
SNAP00000029358 ENSEMBL cdna:SNAP chromosome:CEL140:III:5185973:5187842:1 11/11 None
GENEFINDER00000029365 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5186119:5190084:1 11/11 None
Y34F4.3 ENSEMBL cdna:known chromosome:CEL140:III:1015671:1016084:-1 gene:Y34F4.3 11/11 A 
K10D2.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5185875:5188582:1 gene:K10D2.2 11/11 None
K10D2.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5185877:5188582:1 gene:K10D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5185971-5187841(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y34F4.3
K10D2.2
Entrez Gene 175708 Entrez gene
189592 Entrez gene
SwissProt Q09408 EMBL-EBI
Q9GR67 EMBL-EBI
WormBase CE27429 Wormbase
CE26639 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62540 Hypothetical protein K10D2.2 [Caenorhabditis elegans] ref|NP_498100.1| K10D2.2 [Caenorhabditis elegans] 0.0
blast CAE60032 Hypothetical protein CBG03540 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 7.9E-17
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 7.9E-17
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 7.9E-17
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 1.5E-19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.015
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.27
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.69
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.41
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.083
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:182477_S_AT
gtcgtgcttctgtcgttgatttgttcgttggattcttggattactatgccacatactttg
actactccacaaatgttatccagatggtgtccaagaaattggaattcaaaccggatcgct
ggtgcaagtatccaatgtgtattgctgatccgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTGCTTCTGTCGTTGATTTGTT 341 473 1079 Antisense
GTGCTTCTGTCGTTGATTTGTTCGT 246 479 1082 Antisense
GCTTCTGTCGTTGATTTGTTCGTTG 631 305 1084 Antisense
GTCGTTGATTTGTTCGTTGGATTCT 606 473 1090 Antisense
GATTTGTTCGTTGGATTCTTGGATT 704 427 1096 Antisense
TATGCCACATACTTTGACTACTCCA 475 657 1123 Antisense
CACATACTTTGACTACTCCACAAAT 565 195 1128 Antisense
TTATCCAGATGGTGTCCAAGAAATT 141 681 1154 Antisense
GATCGCTGGTGCAAGTATCCAATGT 373 417 1192 Antisense
GTATCCAATGTGTATTGCTGATCCG 396 455 1206 Antisense
TCCAATGTGTATTGCTGATCCGTTC 510 585 1209 Antisense
Sequence Source Affymetrix Proprietary Database