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[182476_at]

Description K10D2.2 /REP_DB=WormBase Gene ID /WP=CE27429 /TR=Q09408 /GB=AAA62540.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 148.6
(-0.5)
A 		138.3
(-0.8)
A 		68.8
(-3)
A 		258.9
(3)
P 		190
B 174.7
(-0.6)
A 		152.7
(-1.4)
A 		102.2
(-3)
A 		286.9
(3)
A 		185
C 156.7
(-2.6)
P 		196.2
(-1.4)
A 		143.7
(-3)
A 		340.6
(3)
P 		197
avr 160
(-1.3) 		162.4
(-1.2) 		104.9
(-3) 		295.5
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 142.1
(-1.1)
A 		89.3
(-3)
A 		168.7
(-0.2)
A 		115.8
(-2)
A 		256.5
(3)
P 		128
(-1.6)
A 		167
B 167.2
(-1.5)
A 		121.9
(-3)
A 		153.7
(-1.9)
A 		168.7
(-1.4)
A 		232.7
(0.8)
P 		298.2
(3)
P 		176
C 100.5
(-2.7)
A 		131.9
(-1.5)
A 		91
(-3)
A 		112.3
(-2.2)
A 		212.4
(1.4)
P 		254.7
(3)
P 		164
avr 136.6
(-1.9) 		114.4
(-3) 		137.8
(-1.8) 		132.3
(-2.1) 		233.9
(3) 		227
(2.7) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 54.1
(3)
A 		30
(-1)
A 		18
(-3)
A 		37.9
(0.3)
P 		36
B 55.7
(2.1)
A 		37.7
(-0.8)
A 		23.7
(-3)
A 		61.1
(3)
A 		37
C 51.9
(-1.5)
P 		56.4
(2.2)
A 		50.1
(-3)
A 		57.4
(3)
P 		7
avr 53.9
(3) 		41.4
(-0.2) 		30.6
(-3) 		52.1
(2.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 26.2
(-3)
A 		31.8
(-2.3)
A 		36.7
(-1.8)
A 		29.4
(-2.6)
A 		77.4
(3)
P 		31.2
(-2.4)
A 		51
B 58.2
(-1.3)
A 		40.6
(-2.7)
A 		37.3
(-3)
A 		44.7
(-2.4)
A 		94.5
(1.6)
P 		111.2
(3)
P 		74
C 37.3
(-1.6)
A 		40.2
(-1.3)
A 		23.2
(-2.9)
A 		22.6
(-3)
A 		68.7
(1.4)
P 		85.3
(3)
P 		63
avr 40.6
(-2) 		37.5
(-2.3) 		32.4
(-3) 		32.2
(-3) 		80.2
(3) 		75.9
(2.5) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6469
Sequence Type Exemplar sequence
Representative Public ID K10D2.2 NCBI
Target Description K10D2.2 /REP_DB=WormBase Gene ID /WP=CE27429 /TR=Q09408 /GB=AAA62540.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065699 NCBI Caenorhabditis elegans K10D2.2 (K10D2.2) mRNA, complete cds. 11/11 A 
SNAP00000029358 ENSEMBL cdna:SNAP chromosome:CEL140:III:5185973:5187842:1 11/11 None
GENEFINDER00000029365 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5186119:5190084:1 11/11 None
K10D2.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5185875:5188582:1 gene:K10D2.2 11/11 None
K10D2.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5185877:5188582:1 gene:K10D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5185971-5187841(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D2.2
Entrez Gene 175708 Entrez gene
SwissProt Q09408 EMBL-EBI
WormBase CE27429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62540 Hypothetical protein K10D2.2 [Caenorhabditis elegans] ref|NP_498100.1| K10D2.2 [Caenorhabditis elegans] 0.0
blast CAE60032 Hypothetical protein CBG03540 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 1.5E-19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.015
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.27
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.69
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.41
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.083
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:182476_AT
gtgatgcttattcattatcttcagcaagtcgaaccaattcctgtgttgccatgtcttcag
gaaatgaaccatcagaaaagtgaaaatgtctacgtccaaggttacaacacgtattattgg
aaattcgtagacactgctcgtacacgacgttgtcgtgcttctgtcgttgatttgttcgtt
ggattcttggattactatgccacatactttgactactccacaaatgttatccagatggtg
tccaagaaattggaattcaaaccggatcgctggtgcaagtatccaatgtgtattgctgat
ccgttcgagacggatcataatttggcacaaggtgttgatatgccaatgtttgaatacatt
agatcgtgtatggaacactcgaagaaagtattcacggatcgccgcatgcgctcggagttt
ctttcgggatacgggttcgacgttgacgaatttgatgcaaggcatcgaggcgaaatgaac
atggaaatggcgtcacaatttggggaattccttcttcacaagtgcataatggtgaaacaa
gccccgaatcgtcaattccgtgatcgcagtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATGCTTATTCATTATCTTCAGC 620 483 928 Antisense
AGTCGAACCAATTCCTGTGTTGCCA 277 61 954 Antisense
TGTGTTGCCATGTCTTCAGGAAATG 92 557 969 Antisense
ATGTCTACGTCCAAGGTTACAACAC 459 47 1013 Antisense
AATTCGTAGACACTGCTCGTACACG 543 175 1049 Antisense
ACACGACGTTGTCGTGCTTCTGTCG 576 109 1069 Antisense
GAATTCAAACCGGATCGCTGGTGCA 270 323 1180 Antisense
TCGGGATACGGGTTCGACGTTGACG 533 583 1351 Antisense
GGAATTCCTTCTTCACAAGTGCATA 124 535 1431 Antisense
GAAACAAGCCCCGAATCGTCAATTC 489 355 1461 Antisense
ATCGTCAATTCCGTGATCGCAGTAT 606 33 1475 Antisense
Sequence Source Affymetrix Proprietary Database