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[182475_at]

Description Y43F8C.4 /REP_DB=WormBase Gene ID /WP=CE21902 /TR=Q9XWN2 /GB=CAA21619.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 106.9
(3)
P 		75.1
(-3)
A 		81.8
(-1.7)
A 		94.3
(0.6)
A 		32
B 73.1
(-2)
P 		118.8
(3)
A 		101.3
(1.1)
A 		64.2
(-3)
A 		55
C 110.3
(3)
P 		90.1
(0.8)
A 		83.8
(0.1)
M 		56.2
(-3)
A 		54
avr 96.8
(3) 		94.7
(2.5) 		89
(1.1) 		71.6
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 119.1
(2.4)
A 		55.8
(-2.5)
A 		48.8
(-3)
M 		76.6
(-0.9)
A 		127.5
(3)
P 		77.2
(-0.8)
P 		79
B 77.1
(3)
P 		67.1
(1.4)
P 		70
(1.9)
A 		39.4
(-3)
P 		74
(2.5)
P 		64
(0.9)
P 		38
C 55.9
(-3)
A 		79.6
(0.3)
P 		58.8
(-2.6)
A 		99.5
(3)
P 		75
(-0.4)
A 		61.9
(-2.2)
P 		44
avr 84
(1.5) 		67.5
(-1.5) 		59.2
(-3) 		71.8
(-0.7) 		92.2
(3) 		67.7
(-1.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 38.9
(3)
P 		16.3
(-2.4)
A 		21.4
(-1.2)
A 		13.8
(-3)
A 		25
B 23.3
(0.7)
P 		29.3
(3)
A 		23.5
(0.8)
A 		13.7
(-3)
A 		16
C 36.5
(3)
P 		25.9
(0.6)
A 		29.2
(1.4)
M 		9.5
(-3)
A 		27
avr 32.9
(3) 		23.8
(0.3) 		24.7
(0.6) 		12.3
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 22
(-0.5)
A 		19.8
(-1)
A 		10.6
(-3)
M 		19.4
(-1.1)
A 		38.5
(3)
P 		18.8
(-1.2)
P 		28
B 26.8
(2)
P 		22.3
(0.6)
P 		17
(-1)
A 		10.4
(-3)
P 		30.1
(3)
P 		23.9
(1.1)
P 		20
C 20.7
(0.7)
A 		24.3
(3)
P 		15
(-3)
A 		20
(0.2)
P 		24.3
(3)
A 		20.7
(0.7)
P 		9
avr 23.2
(0.2) 		22.1
(-0.2) 		14.2
(-3) 		16.6
(-2.1) 		31
(3) 		21.1
(-0.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13195
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.4 NCBI
Target Description Y43F8C.4 /REP_DB=WormBase Gene ID /WP=CE21902 /TR=Q9XWN2 /GB=CAA21619.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075403 NCBI Caenorhabditis elegans Y43F8C.4 (Y43F8C.4) mRNA, complete cds. 11/11 None
SNAP00000039609 ENSEMBL cdna:SNAP chromosome:CEL140:V:19626369:19638895:1 9/11 None
GENEFINDER00000039633 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19627623:19633196:1 11/11 None
Y43F8C.4 ENSEMBL cdna:known chromosome:CEL140:V:19627634:19633256:1 gene:Y43F8C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19627633-19633196(+) 98.91 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.4
Entrez Gene 180283 Entrez gene
SwissProt Q9XWN2 EMBL-EBI
WormBase CE34119 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21619 Hypothetical protein Y43F8C.4 [Caenorhabditis elegans] ref|NP_507804.2| Y43F8C.4 [Caenorhabditis elegans] 0.0
blast CAA21619 Hypothetical protein Y43F8C.4 [Caenorhabditis elegans] ref|NP_507804.2| Y43F8C.4 [Caenorhabditis elegans] 1.0E-151
blast CAE61736 Hypothetical protein CBG05687 [Caenorhabditis briggsae] 1.0E-140
blast CAE61736 Hypothetical protein CBG05687 [Caenorhabditis briggsae] 1.0E-135
blast CAE61736 Hypothetical protein CBG05687 [Caenorhabditis briggsae] 1.0E-103
blast XP_591778 PREDICTED: similar to Fas (TNFRSF6) binding factor 1 isoform 1 [Bos taurus] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182475_AT
gagagagaagctggacctggctaataaattgaaattctaccacaaagatcaaaccgagct
gcttttccggctgagcagtgaacgggagcttttggagcaggagaagagcgaattctttgc
aaaacgggaccaggacatcaagagaatcaaagcagaagcctacgagctggatctgaaatc
tcagcaaatttctacggctgaccaacatgtgacggagatgaagctggtgacagaggccaa
gtacagacagcttcaacacctcgagaccctgctcaccgccgaatgctcggaaatcgaaag
aatccgaaatgagcaaaaaatcggtggaaacgtggattcgggccgggacgcacgaagaat
aagccgtgaggaggagctgtttggttcgaataattccaatcaaaatagtcatcgacatcg
atcggaaagtgttcgggcttcactcaaaaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAGAAGCTGGACCTGGCTAAT 653 391 876 Antisense
GATCAAACCGAGCTGCTTTTCCGGC 209 421 922 Antisense
GCTTTTCCGGCTGAGCAGTGAACGG 520 293 936 Antisense
GCGAATTCTTTGCAAAACGGGACCA 474 287 983 Antisense
AGCCTACGAGCTGGATCTGAAATCT 91 83 1032 Antisense
TCTACGGCTGACCAACATGTGACGG 632 613 1066 Antisense
AAGTACAGACAGCTTCAACACCTCG 645 155 1114 Antisense
TCGGTGGAAACGTGGATTCGGGCCG 508 603 1196 Antisense
ATTCGGGCCGGGACGCACGAAGAAT 708 9 1211 Antisense
GCCGTGAGGAGGAGCTGTTTGGTTC 506 283 1238 Antisense
GTGTTCGGGCTTCACTCAAAAAACA 12 485 1304 Antisense
Sequence Source Affymetrix Proprietary Database