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[182473_at] 7TM chemoreceptor, sre family

Description C42C1.1 /REP_DB=WormBase Gene ID /WP=CE16907 /TR=O44974 /GB=AAB97543.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 21      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 90
(1.7)
P 		51.6
(-0.5)
A 		8
(-3)
A 		113.7
(3)
A 		106
B 83
(-0.2)
P 		19.3
(-3)
A 		23.7
(-2.8)
A 		156
(3)
P 		137
C 174.4
(2)
P 		74.5
(-1.6)
A 		36.1
(-3)
A 		201.4
(3)
P 		165
avr 115.8
(1.2) 		48.5
(-1.8) 		22.6
(-3) 		157
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 102.2
(3)
A 		72.1
(1.1)
P 		32.2
(-1.4)
A 		49.9
(-0.3)
A 		10.8
(-2.7)
A 		6
(-3)
A 		96
B 119.7
(3)
P 		69.1
(0.3)
M 		5.4
(-3)
A 		21.4
(-2.2)
A 		45.9
(-0.9)
A 		66.2
(0.2)
A 		114
C 87.7
(3)
P 		64
(1.2)
A 		10.2
(-3)
A 		65
(1.2)
A 		24.4
(-1.9)
A 		41.9
(-0.5)
A 		78
avr 103.2
(3) 		68.4
(0.6) 		15.9
(-3) 		45.4
(-1) 		27
(-2.2) 		38
(-1.5) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 32.8
(3)
P 		11.2
(-1.2)
A 		2.1
(-3)
A 		16.6
(-0.2)
A 		31
B 26.5
(1.6)
P 		4.8
(-3)
A 		5.5
(-2.9)
A 		33.2
(3)
P 		28
C 57.7
(3)
P 		21.4
(-1.8)
A 		12.6
(-3)
A 		34
(-0.2)
P 		45
avr 39
(3) 		12.5
(-1.9) 		6.7
(-3) 		27.9
(0.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 18.8
(1.3)
A 		25.7
(3)
P 		7
(-1.6)
A 		12.7
(-0.2)
A 		3.3
(-2.5)
A 		1.4
(-3)
A 		24
B 41.6
(3)
P 		23
(0.2)
M 		1.3
(-3)
A 		5.7
(-2.3)
A 		18.7
(-0.4)
A 		24.7
(0.5)
A 		40
C 32.5
(3)
P 		19.5
(0.4)
A 		2.6
(-3)
A 		13.1
(-0.9)
A 		7.9
(-1.9)
A 		14
(-0.7)
A 		30
avr 31
(3) 		22.7
(1.2) 		3.6
(-3) 		10.5
(-1.5) 		10
(-1.6) 		13.4
(-0.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8773
Sequence Type Exemplar sequence
Representative Public ID C42C1.1 NCBI
Target Description C42C1.1 /REP_DB=WormBase Gene ID /WP=CE16907 /TR=O44974 /GB=AAB97543.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069927 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-14) (sre-14) mRNA, complete cds. 11/11 None
GENEFINDER00000027951 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12259863:12261420:-1 11/11 None
C42C1.1 ENSEMBL cdna:known chromosome:CEL140:IV:12259863:12261420:-1 gene:C42C1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027931 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12260089-12261426(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-14
Ensembl C42C1.1
Entrez Gene 183397 Entrez gene
SwissProt O44974 EMBL-EBI
WormBase CE38043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_502328 Serpentine Receptor, class E (epsilon) family member (sre-14) [Caenorhabditis elegans] gb|AAB97543.2| Hypothetical protein C42C1.1 [Caenorhabditis elegans] 1.0E-169
blast CAE62210 Hypothetical protein CBG06260 [Caenorhabditis briggsae] 1.0E-105
blast CAE62209 Hypothetical protein CBG06259 [Caenorhabditis briggsae] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.5E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502328.2 7 15-37,58-80,100-122,135-157,162-184,218-240,255-277
C42C1.1 7 15-37,58-80,100-122,135-157,162-184,218-240,255-277
GENEFINDER00000027951 7 15-37,58-80,100-122,135-157,162-184,218-240,255-277
Sequence
Target Sequence 
>C. ELEGANS:182473_AT
aacatttcaatttctacaccatctaagaacttccactgtatttccaggattaatatgctt
gactgctttcgtgatagaacggtttttggccacattgtacttgaaggattatgagcgtaa
aaatagatggtggattgggattataattggaatcgggttgtacacagcaggaggtctttt
ggcatattcactggcaattgttgcaacaagtttctaccacacagtttttctacttgtttt
gagtgcgactagttgcttgggtaacatgttgaactacaaaataaatcagaaatactatcg
agcctgccaacaaagttacaacgggaaatactgtttggctgaaaggtatcagatttctga
taatattcatttttacttttttttcattcggtttgcttcaagtatcttcttcttcacaat
tctctgtccggttctgatgttagtggccagttttgaaatagattggttctaccggaatct
ctgcatcactttgttcgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTTCAATTTCTACACCATCTA 162 139 288 Antisense
GAACTTCCACTGTATTTCCAGGATT 521 349 314 Antisense
AATATGCTTGACTGCTTTCGTGATA 501 171 339 Antisense
GAACGGTTTTTGGCCACATTGTACT 149 349 364 Antisense
GGAGGTCTTTTGGCATATTCACTGG 340 515 457 Antisense
GTTTCTACCACACAGTTTTTCTACT 666 449 497 Antisense
GAAATACTATCGAGCCTGCCAACAA 472 363 576 Antisense
TTTGCTTCAAGTATCTTCTTCTTCA 319 669 679 Antisense
TTCTCTGTCCGGTTCTGATGTTAGT 274 691 707 Antisense
ATTGGTTCTACCGGAATCTCTGCAT 489 3 749 Antisense
ATCTCTGCATCACTTTGTTCGAGTT 406 33 764 Antisense
Sequence Source Affymetrix Proprietary Database