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[182472_at]

Description F25F6.1 /REP_DB=WormBase Gene ID /WP=CE09634 /TR=P91271 /GB=AAB42351.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 26.1
(-3)
A 		42.3
(-1.4)
A 		86.5
(3)
P 		52.3
(-0.4)
A 		60
B 34.5
(-3)
A 		46.3
(-0.9)
A 		67.5
(3)
A 		36.3
(-2.7)
A 		33
C 48.1
(-3)
A 		94.5
(3)
P 		55.4
(-2.1)
P 		79.8
(1.1)
A 		46
avr 36.2
(-3) 		61
(1.4) 		69.8
(3) 		56.1
(0.6) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 7.9
(-3)
A 		39.2
(1.4)
A 		35.3
(0.8)
A 		28.4
(-0.1)
A 		29.5
(0)
A 		50.7
(3)
A 		43
B 38.3
(-0.6)
A 		72.5
(3)
P 		33.8
(-1.1)
A 		57.9
(1.5)
P 		47.4
(0.3)
A 		15.9
(-3)
A 		57
C 46.6
(1.3)
A 		44.5
(1.1)
A 		61.4
(3)
A 		50.2
(1.7)
A 		53.1
(2.1)
A 		8
(-3)
A 		53
avr 30.9
(-1.7) 		52.1
(3) 		43.5
(1.1) 		45.5
(1.5) 		43.3
(1.1) 		24.9
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.5
(-2.2)
A 		9.2
(-2.4)
A 		22.6
(3)
P 		7.6
(-3)
A 		15
B 11
(-0.5)
A 		11.4
(-0.2)
A 		15.6
(3)
A 		7.7
(-3)
A 		8
C 15.9
(-1.9)
A 		27.2
(3)
P 		19.3
(-0.4)
P 		13.4
(-3)
A 		14
avr 12.1
(-1.4) 		15.9
(0.9) 		19.2
(3) 		9.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.5
(-3)
A 		13.9
(3)
A 		7.7
(0)
A 		7.2
(-0.2)
A 		8.9
(0.6)
A 		12.3
(2.2)
A 		12
B 13.3
(-0.6)
A 		24.1
(3)
P 		8.2
(-2.2)
A 		15.3
(0.1)
P 		19.3
(1.4)
A 		5.9
(-3)
A 		18
C 17.3
(3)
A 		13.6
(1.5)
A 		15.6
(2.3)
A 		10.1
(0)
A 		17.2
(3)
A 		2.7
(-3)
A 		15
avr 10.7
(-0.8) 		17.2
(3) 		10.5
(-0.9) 		10.9
(-0.7) 		15.1
(1.8) 		7
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17022
Sequence Type Exemplar sequence
Representative Public ID F25F6.1 NCBI
Target Description F25F6.1 /REP_DB=WormBase Gene ID /WP=CE09634 /TR=P91271 /GB=AAB42351.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076364 NCBI Caenorhabditis elegans F25F6.1 (F25F6.1) mRNA, complete cds. 11/11 None
SNAP00000001091 ENSEMBL cdna:SNAP chromosome:CEL140:X:4443604:4446428:-1 11/11 None
GENEFINDER00000001092 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4443604:4445775:-1 11/11 None
F25F6.1 ENSEMBL cdna:known chromosome:CEL140:X:4444670:4445851:-1 gene:F25F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4444670-4445852(-) 98.44 100.0
Public Domain and Genome References
Gene Title
Ensembl F25F6.1
Entrez Gene 184931 Entrez gene
SwissProt P91271 EMBL-EBI
WormBase CE09634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42351 Hypothetical protein F25F6.1 [Caenorhabditis elegans] ref|NP_508765.1| F25F6.1 [Caenorhabditis elegans] 1.0E-145
blast AAB42351 Hypothetical protein F25F6.1 [Caenorhabditis elegans] ref|NP_508765.1| F25F6.1 [Caenorhabditis elegans] 1.0E-139
blast AAB42351 Hypothetical protein F25F6.1 [Caenorhabditis elegans] ref|NP_508765.1| F25F6.1 [Caenorhabditis elegans] 1.0E-130
blast NP_508764 F15A8.7 [Caenorhabditis elegans] gb|AAB52849.2| Hypothetical protein F15A8.7 [Caenorhabditis elegans] 4.0E-72
blast NP_508764 F15A8.7 [Caenorhabditis elegans] gb|AAB52849.2| Hypothetical protein F15A8.7 [Caenorhabditis elegans] 5.0E-72
blast CAE68595 Hypothetical protein CBG14466 [Caenorhabditis briggsae] 4.0E-63
Sequence
Target Sequence 
>C. ELEGANS:182472_AT
ttcacaacaactagatcaccaccgcgattatcatttcacaatattccacgtcccctcatc
aagcaactttacgtttctccatctcgaaaatacgtggagaaaaactacgaaataccgcca
agtagtcagaaagcaacttcttccaatctatactacagcagtgttcaccatttatgggtt
caaaacccaataagacagcaaaaacaatcgagaagattcaaaagagctgacgatatcatg
gaagcatatgatttgtttctggaagagcagaggaatttgaaaaagtctgaaaacgctttg
aaaaaaatcattgaagaccctgtggagcgaaatatgtttgggttgccaaggcatatgtct
atgccaagatcaaaaagaagtgcatcagagccagtccaagaagatgactctaaaaacaca
tcgggaccagtagttgacataccaaagctggcttcaaagtatttccaaagaatagttggt
ggttccactgggcaacatgatcacttggataatattcgccgtattcgaaaccattatcgt
cgtgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACAACAACTAGATCACCACCGC 413 685 166 Antisense
TCACCACCGCGATTATCATTTCACA 560 625 181 Antisense
ATCATTTCACAATATTCCACGTCCC 645 29 195 Antisense
CAAGCAACTTTACGTTTCTCCATCT 416 185 225 Antisense
CTTCTTCCAATCTATACTACAGCAG 597 221 302 Antisense
ACTACAGCAGTGTTCACCATTTATG 580 99 317 Antisense
GAAGTGCATCAGAGCCAGTCCAAGA 709 333 542 Antisense
ACACATCGGGACCAGTAGTTGACAT 451 111 581 Antisense
GTTGACATACCAAAGCTGGCTTCAA 171 439 598 Antisense
GGTTCCACTGGGCAACATGATCACT 464 507 646 Antisense
ATTCGAAACCATTATCGTCGTGTCG 167 9 688 Antisense
Sequence Source Affymetrix Proprietary Database