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[182471_at]

Description F20D1.10 /REP_DB=WormBase Gene ID /WP=CE23677 /TR=Q9U3I4 /GB=CAB54233.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 67      6grp_total > 74      4grp_total > 02      6grp_cgc > 76      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4689
1 2 3 4 range
A 997.2
(-2.9)
P 		1230.7
(-2.5)
P 		899.9
(-3)
P 		5016.6
(3)
P 		4117
B 1051.7
(-2.8)
P 		916.2
(-3)
P 		920.3
(-3)
P 		4868.1
(3)
P 		3952
C 1112.5
(-2.7)
P 		1105.3
(-2.7)
P 		870.5
(-3)
P 		5559.5
(3)
P 		4689
avr 1053.8
(-2.8) 		1084.1
(-2.7) 		896.9
(-3) 		5148.1
(3) 		4251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1099
1 2 3 4 5 6 range
A 1659.1
(-1.8)
P 		1542.2
(-3)
P 		1949.3
(1)
P 		2149.9
(3)
P 		1615.3
(-2.3)
P 		1638
(-2.1)
P 		608
B 1544.4
(-2.4)
P 		1436.7
(-3)
P 		2464.3
(3)
P 		1999.2
(0.3)
P 		1904.2
(-0.3)
P 		1774.2
(-1)
P 		1028
C 1483
(-2.1)
P 		1365.4
(-3)
P 		1629
(-1.1)
P 		1912.1
(1)
P 		1571
(-1.5)
P 		2179.7
(3)
P 		814
avr 1562.2
(-1.8) 		1448.1
(-3) 		2014.2
(2.9) 		2020.4
(3) 		1696.8
(-0.4) 		1864
(1.4) 		572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 824
1 2 3 4 range
A 363.1
(-1.5)
P 		267.2
(-2.6)
P 		235.3
(-3)
P 		734.3
(3)
P 		499
B 335.4
(-2.1)
P 		226.3
(-2.9)
P 		213.3
(-3)
P 		1037.4
(3)
P 		824
C 368.3
(-2.4)
P 		317.8
(-2.9)
P 		303.4
(-3)
P 		937.4
(3)
P 		634
avr 355.6
(-2) 		270.4
(-2.8) 		250.7
(-3) 		903
(3) 		652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 305.8
(-3)
P 		548.5
(3)
P 		424.5
(-0.1)
P 		545.3
(2.9)
P 		487.4
(1.5)
P 		398.8
(-0.7)
P 		243
B 537.4
(-1.8)
P 		478.2
(-3)
P 		598.4
(-0.6)
P 		529.5
(-2)
P 		773.6
(3)
P 		661.6
(0.7)
P 		295
C 549.7
(-0.1)
P 		416.6
(-2.4)
P 		414.6
(-2.5)
P 		384.5
(-3)
P 		508.4
(-0.8)
P 		729.7
(3)
P 		345
avr 464.3
(-3) 		481.1
(-2.2) 		479.2
(-2.3) 		486.4
(-2) 		589.8
(2.7) 		596.7
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17715
Sequence Type Exemplar sequence
Representative Public ID F20D1.10 NCBI
Target Description F20D1.10 /REP_DB=WormBase Gene ID /WP=CE23677 /TR=Q9U3I4 /GB=CAB54233.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078086 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-299) (tag-299) mRNA, complete cds. 11/11 None
SNAP00000040731 ENSEMBL cdna:SNAP chromosome:CEL140:X:14979606:14979927:1 11/11 None
GENEFINDER00000040740 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14979606:14979927:1 11/11 None
F20D1.10.2 ENSEMBL cdna:known chromosome:CEL140:X:14979290:14980026:1 gene:F20D1.10 11/11 None
F20D1.10.1 ENSEMBL cdna:known chromosome:CEL140:X:14979604:14980034:1 gene:F20D1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14979605-14979927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-299
Ensembl F20D1.10
Entrez Gene 181594 Entrez gene
SwissProt Q9U3I4 EMBL-EBI
WormBase CE23677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54233 Hypothetical protein F20D1.10 [Caenorhabditis elegans] ref|NP_510487.1| Temporarily Assigned Gene name family member (tag-299) [Caenorhabditis elegans] 6.0E-45
blast CAE63274 Hypothetical protein CBG07651 [Caenorhabditis briggsae] 5.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510487.1 1 49-68
F20D1.10.2 1 49-68
F20D1.10.1 1 49-68
SNAP00000040731 1 49-68
GENEFINDER00000040740 1 49-68
Sequence
Target Sequence 
>C. ELEGANS:182471_AT
atgaccagcaagaccgtcttccagaacgcgttcaaaacctttctggactttgcgataaac
tcccttccttctacacagggcgggttgaacatcaccgcaacagcccccggcggcgtggga
caaagaccattcacaaacaaggctggtgtactgaaacttatcttcgtgtctgcaagctct
ctatatattggcgggttgatcgctcacaaaggtgcctcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCAGCAAGACCGTCTTCCAGA 628 45 13 Antisense
GCGTTCAAAACCTTTCTGGACTTTG 226 285 40 Antisense
TGGACTTTGCGATAAACTCCCTTCC 349 525 56 Antisense
TTCCTTCTACACAGGGCGGGTTGAA 74 699 77 Antisense
GCGGGTTGAACATCACCGCAACAGC 402 293 92 Antisense
GGCGGCGTGGGACAAAGACCATTCA 287 497 121 Antisense
AGGCTGGTGTACTGAAACTTATCTT 479 53 152 Antisense
GAAACTTATCTTCGTGTCTGCAAGC 270 357 165 Antisense
GTCTGCAAGCTCTCTATATATTGGC 467 471 180 Antisense
ATATTGGCGGGTTGATCGCTCACAA 315 19 197 Antisense
GATCGCTCACAAAGGTGCCTCATAT 519 417 210 Antisense
Sequence Source Affymetrix Proprietary Database