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[182470_at]

Description F09F7.6 /REP_DB=WormBase Gene ID /WP=CE01238 /TR=Q19276 /GB=AAA50698.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 59      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13045
1 2 3 4 range
A 2180.8
(-2.8)
P 		2348.2
(-2.7)
P 		1702.5
(-3)
P 		14747.8
(3)
P 		13045
B 2325.8
(-2.7)
P 		2005.4
(-2.8)
P 		1750
(-3)
P 		11709.6
(3)
P 		9960
C 2192.6
(-2.9)
P 		1993.8
(-3)
P 		1936.6
(-3)
P 		13477.9
(3)
P 		11541
avr 2233.1
(-2.8) 		2115.8
(-2.8) 		1796.4
(-3) 		13311.8
(3) 		11515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5442
1 2 3 4 5 6 range
A 1702.3
(-3)
P 		2124.2
(-2.4)
P 		3649.2
(-0.1)
P 		4030.2
(0.5)
P 		3947.1
(0.4)
P 		5716.4
(3)
P 		4014
B 1967.5
(-3)
P 		2434.2
(-2.5)
P 		3262.1
(-1.5)
P 		3373
(-1.4)
P 		4908.7
(0.4)
P 		7144.4
(3)
P 		5177
C 1855.5
(-3)
P 		2574.7
(-2.1)
P 		2657
(-2)
P 		4049.7
(-0.4)
P 		4056.6
(-0.4)
P 		6900.8
(3)
P 		5045
avr 1841.8
(-3) 		2377.7
(-2.3) 		3189.4
(-1.3) 		3817.6
(-0.5) 		4304.1
(0.1) 		6587.2
(3) 		4745
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2090
1 2 3 4 range
A 794
(-1.8)
P 		509.7
(-2.8)
P 		445.1
(-3)
P 		2158.8
(3)
P 		1714
B 741.7
(-2)
P 		495.3
(-2.7)
P 		405.5
(-3)
P 		2495.3
(3)
P 		2090
C 725.8
(-2.5)
P 		573.2
(-3)
P 		675
(-2.6)
P 		2272.6
(3)
P 		1699
avr 753.8
(-2.2) 		526.1
(-2.9) 		508.5
(-3) 		2308.9
(3) 		1800

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2350
1 2 3 4 5 6 range
A 313.8
(-3)
P 		755.5
(-0.5)
P 		794.7
(-0.3)
P 		1022.1
(0.9)
P 		1191.1
(1.9)
P 		1391.8
(3)
P 		1078
B 684.6
(-3)
P 		810.3
(-2.6)
P 		792.1
(-2.7)
P 		893.4
(-2.4)
P 		1994.4
(1)
P 		2664.1
(3)
P 		1980
C 687.8
(-3)
P 		785.6
(-2.6)
P 		676.2
(-3)
P 		814.4
(-2.5)
P 		1312.7
(-0.7)
P 		2310.1
(3)
P 		1634
avr 562.1
(-3) 		783.8
(-2.1) 		754.3
(-2.3) 		910
(-1.7) 		1499.4
(0.6) 		2122
(3) 		1560
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7710
Sequence Type Exemplar sequence
Representative Public ID F09F7.6 NCBI
Target Description F09F7.6 /REP_DB=WormBase Gene ID /WP=CE01238 /TR=Q19276 /GB=AAA50698.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065788 NCBI Caenorhabditis elegans F09F7.6 (F09F7.6) mRNA, complete cds. 11/11 None
SNAP00000025396 ENSEMBL cdna:SNAP chromosome:CEL140:III:5551276:5552069:-1 11/11 None
GENEFINDER00000025405 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5551276:5552069:-1 11/11 None
F09F7.6 ENSEMBL cdna:known chromosome:CEL140:III:5551276:5552069:-1 gene:F09F7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5551274-5552068(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09F7.6
Entrez Gene 184260 Entrez gene
SwissProt Q19276 EMBL-EBI
WormBase CE01238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498189 F09F7.6 [Caenorhabditis elegans] gb|AAA50698.1| Hypothetical protein F09F7.6 [Caenorhabditis elegans] 7.0E-36
blast CAE56367 Hypothetical protein CBG24042 [Caenorhabditis briggsae] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:182470_AT
cgtcttgccaaaatcggccgtcaagagtatgatctcattagaatccacgacgcgccaaat
tgcgatgatcagacaaagttcgagtgtgacttggaattggctcggtatcaagtaattcgc
agtgaaatggctttgaaaaacgtatacaacgaggaatttgtgacccctgcaaaactccgt
tatctccgtgatgatctggaagccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTTGCCAAAATCGGCCGTCAAG 206 245 31 Antisense
TCGGCCGTCAAGAGTATGATCTCAT 95 607 44 Antisense
GATCTCATTAGAATCCACGACGCGC 202 419 61 Antisense
GAATCCACGACGCGCCAAATTGCGA 121 327 71 Antisense
GACGCGCCAAATTGCGATGATCAGA 210 381 79 Antisense
GATCAGACAAAGTTCGAGTGTGACT 219 421 97 Antisense
GTGTGACTTGGAATTGGCTCGGTAT 47 489 114 Antisense
GGCTCGGTATCAAGTAATTCGCAGT 507 539 129 Antisense
CAACGAGGAATTTGTGACCCCTGCA 48 187 177 Antisense
GAATTTGTGACCCCTGCAAAACTCC 466 323 184 Antisense
ATCTCCGTGATGATCTGGAAGCCGC 496 33 212 Antisense
Sequence Source Affymetrix Proprietary Database