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[182469_at]

Description F48E3.8 /REP_DB=WormBase Gene ID /WP=CE26366 /TR=Q9GP97 /GB=AAF99959.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 30      4grp_high_8_8 > 25      6grp_total > 35      4grp_total > 38      6grp_high1_sub > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 137.5
(3)
P 		85.9
(-0.6)
P 		52.6
(-3)
A 		94
(-0.1)
P 		85
B 146.3
(3)
P 		88.5
(-1.6)
P 		70.9
(-3)
A 		72.6
(-2.9)
P 		75
C 129.9
(3)
P 		106.4
(0.7)
A 		69.2
(-3)
P 		113.7
(1.4)
P 		61
avr 137.9
(3) 		93.6
(-0.6) 		64.2
(-3) 		93.4
(-0.6) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 126.5
(3)
P 		87
(0.3)
P 		38.4
(-3)
A 		84.4
(0.1)
P 		77.7
(-0.3)
P 		82.6
(0)
P 		88
B 99.8
(3)
P 		90
(1.8)
P 		84
(1.1)
P 		65.4
(-1.2)
P 		51.1
(-3)
P 		79.1
(0.4)
P 		49
C 61.2
(-1.7)
P 		120
(2.2)
P 		131.8
(3)
P 		61.2
(-1.7)
A 		41.5
(-3)
M 		45.6
(-2.7)
A 		90
avr 95.8
(2.5) 		99
(3) 		84.7
(1) 		70.3
(-1.1) 		56.8
(-3) 		69.1
(-1.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 50
(3)
P 		18.7
(-2.2)
P 		13.7
(-3)
A 		13.8
(-3)
P 		36
B 46.7
(3)
P 		21.9
(-1.8)
P 		16.4
(-2.8)
A 		15.5
(-3)
P 		31
C 43
(3)
P 		30.6
(-0.1)
A 		24.1
(-1.8)
P 		19.2
(-3)
P 		24
avr 46.6
(3) 		23.7
(-1.5) 		18.1
(-2.6) 		16.2
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 23.3
(1)
P 		30.9
(3)
P 		8.4
(-3)
A 		21.4
(0.5)
P 		23.4
(1)
P 		20.1
(0.1)
P 		23
B 34.7
(3)
P 		29.9
(1.3)
P 		20.4
(-1.9)
P 		17.3
(-3)
P 		20.7
(-1.8)
P 		29.5
(1.2)
P 		17
C 22.7
(-0.4)
P 		36.6
(3)
P 		33.5
(2.2)
P 		12.3
(-3)
A 		13.4
(-2.7)
M 		15.3
(-2.3)
A 		24
avr 26.9
(0.8) 		32.5
(3) 		20.8
(-1.5) 		17
(-3) 		19.2
(-2.1) 		21.6
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182469_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16315
Sequence Type Exemplar sequence
Representative Public ID F48E3.8 NCBI
Target Description F48E3.8 /REP_DB=WormBase Gene ID /WP=CE26366 /TR=Q9GP97 /GB=AAF99959.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171728, NM_171959
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171959 NCBI Caenorhabditis elegans F48E3.8a (F48E3.8) mRNA, complete cds. A 
NM_171728 NCBI Caenorhabditis elegans F48E3.8b (F48E3.8) mRNA, complete cds. A 
SNAP00000044524 ENSEMBL cdna:SNAP chromosome:CEL140:X:7509391:7519613:-1 None
GENEFINDER00000044535 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7509438:7519613:-1 None
F48E3.8a ENSEMBL cdna:known chromosome:CEL140:X:7507881:7517638:-1 gene:F48E3.8 A 
F48E3.8b ENSEMBL cdna:known chromosome:CEL140:X:7507955:7517638:-1 gene:F48E3.8 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171729 6/11 Cross Hyb Matching Probes A 
SNAP00000040275 5/11 Cross Hyb Matching Probes None
GENEFINDER00000040282 5/11 Cross Hyb Matching Probes None
F48E3.8c 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7507394-7517725(-) 100.0 100.0
Public Domain and Genome References
Ensembl F48E3.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69112 Hypothetical protein F48E3.8a [Caenorhabditis elegans] ref|NP_741840.1| F48E3.8a [Caenorhabditis elegans] 0.0
blast T34264 hypothetical protein F46C8.4 - Caenorhabditis elegans 0.0
blast CAE70228 Hypothetical protein CBG16715 [Caenorhabditis briggsae] 0.0
blast AAM69113 Hypothetical protein F48E3.8b [Caenorhabditis elegans] ref|NP_741839.1| F48E3.8b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 4.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.2E-18
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.4E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-13
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.0E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 8.8E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.9E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.0E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 4.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.2E-18
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.4E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-13
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.0E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 8.8E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.9E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 4.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.2E-18
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.4E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.0E-13
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.0E-10
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.1E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.4E-7
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 8.8E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000044524 1 23-40
GENEFINDER00000044535 1 23-40
Sequence
Target Sequence 
>C. ELEGANS:182469_AT
tggtcagcagcccatattggccacaaacgttagatcacaaattagcttgggaatgtgacg
gaaattgtccaacacaaagccataaggctatttgggaaattccaattcaaaacatacagg
caaatgacacgagatggtacaaaacattaacgcgggccatgaaaccgtttgactctcgtg
attctgtgacaaaaatgctccagagaaacttcatgaaccattacaaaaccaaccacaatg
gtgcagtttacgctctcagagactttttgaaattcattgttcaaaaacaagacgttttcg
tggtcacaggaagtcaaattattgattacatgagaaatccggtggaccttaacaatatta
aaagtctgcgttcgtggcaaatcctacgacgtgcagtttcagtggaagagcgagaggaca
atttgcgcatagtttccgaatcttcactgtgtgtgcgcgcaaaactctccacagcaggac
gaagacgcgtcctcgtcctaaacgacagggcacaggctcgtcctcgtcctgccgccgagg
acatcctcgctgacaggcctactgtgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCAGCAGCCCATATTGGCCACA 341 551 6818 Antisense
GGTACAAAACATTAACGCGGGCCAT 220 499 6953 Antisense
CGGGCCATGAAACCGTTTGACTCTC 703 243 6970 Antisense
GTTTGACTCTCGTGATTCTGTGACA 452 451 6984 Antisense
AATGGTGCAGTTTACGCTCTCAGAG 355 163 7054 Antisense
GCGTTCGTGGCAAATCCTACGACGT 701 289 7185 Antisense
CCGAATCTTCACTGTGTGTGCGCGC 559 263 7253 Antisense
CGCAAAACTCTCCACAGCAGGACGA 616 253 7275 Antisense
GCAGGACGAAGACGCGTCCTCGTCC 107 311 7291 Antisense
GTCCTCGTCCTAAACGACAGGGCAC 644 473 7306 Antisense
CTCGCTGACAGGCCTACTGTGCAAA 177 233 7363 Antisense
Sequence Source Affymetrix Proprietary Database