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[182466_at]

Description ZK470.3 /REP_DB=WormBase Gene ID /WP=CE05088 /TR=Q23503 /GB=AAA80393.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      6grp_total > 47      4grp_total > 21      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 267.8
(3)
P 		253
(1.7)
A 		199.6
(-3)
M 		200.1
(-3)
P 		68
B 361.3
(3)
M 		200.8
(-3)
A 		212.1
(-2.6)
A 		272.1
(-0.3)
P 		161
C 252.4
(-0.5)
P 		241.8
(-0.7)
A 		75.7
(-3)
A 		505.4
(3)
P 		430
avr 293.8
(1.8) 		231.9
(-0.5) 		162.5
(-3) 		325.9
(3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 338.3
(3)
P 		174.7
(-1.5)
M 		172
(-1.6)
P 		157
(-2)
A 		121.7
(-3)
P 		279.7
(1.4)
P 		217
B 378.1
(3)
P 		255.3
(0.4)
A 		230.6
(-0.1)
P 		108.2
(-2.7)
A 		94.3
(-3)
P 		367.8
(2.8)
P 		284
C 176.1
(0.5)
P 		154.2
(-0.3)
P 		198.7
(1.3)
A 		245.1
(3)
P 		81
(-3)
A 		134.8
(-1)
P 		164
avr 297.5
(3) 		194.7
(-0.1) 		200.4
(0.1) 		170.1
(-0.9) 		99
(-3) 		260.8
(1.9) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 97.5
(3)
P 		54.9
(-0.7)
A 		52.2
(-1)
M 		29.3
(-3)
P 		68
B 115.2
(3)
M 		49.6
(-3)
A 		49.2
(-3)
A 		58
(-2.2)
P 		66
C 83.6
(2.8)
P 		69.5
(1.4)
A 		26.4
(-3)
A 		85.2
(3)
P 		59
avr 98.8
(3) 		58
(-1.4) 		42.6
(-3) 		57.5
(-1.4) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 62.4
(1.9)
P 		62.1
(1.9)
M 		37.5
(-2.8)
P 		39.8
(-2.4)
A 		36.7
(-3)
P 		68.1
(3)
P 		31
B 131.6
(2.7)
P 		85
(0.1)
A 		56
(-1.5)
P 		28.7
(-3)
A 		38.3
(-2.5)
P 		137.1
(3)
P 		108
C 65.3
(3)
P 		47
(0.2)
P 		50.6
(0.7)
A 		49.3
(0.5)
P 		26.2
(-3)
A 		45.1
(-0.1)
P 		39
avr 86.4
(3) 		64.7
(0.5) 		48
(-1.4) 		39.3
(-2.4) 		33.7
(-3) 		83.4
(2.7) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16741
Sequence Type Exemplar sequence
Representative Public ID ZK470.3 NCBI
Target Description ZK470.3 /REP_DB=WormBase Gene ID /WP=CE05088 /TR=Q23503 /GB=AAA80393.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171661(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171661 NCBI Caenorhabditis elegans ZK470.2c (ZK470.2) mRNA, complete cds. 9/11 A 
ZK470.2c ENSEMBL cdna:known chromosome:CEL140:X:4135107:4147801:1 gene:ZK470.2 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000141 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180689 3 1 NM_171661 182466_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4136548-4137887(+) 75.78 89.32
Public Domain and Genome References
Ensembl ZK470.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 1.0E-122
blast AAA80395 Hypothetical protein ZK470.2a [Caenorhabditis elegans] ref|NP_508704.1| ZK470.2a [Caenorhabditis elegans] 2.0E-71
blast CAE68528 Hypothetical protein CBG14352 [Caenorhabditis briggsae] 3.0E-61
Sequence
Target Sequence 
>C. ELEGANS:182466_AT
ccacgaccagcaccaagaaattaatcttttgcagccaccgccccagaaatcgggggccgc
gccgaaggtgcggtccacggctgcaatcagacatcatttcaatatccattttctccctca
ttttcttctctccccacaataaatcaaatattcagaaagtgtgtctccgcacaatgagca
aaagcgacccgcacctcgacatcccacatctactagtcagccaggacgaagctcatccat
ctctcaataagatcatgtctaacttgcaacatgtgcatgaaggactcaagactccggtct
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGACCAGCACCAAGAAATTAAT 138 273 23 Antisense
AGAAATTAATCTTTTGCAGCCACCG 679 69 38 Antisense
TCATTTCAATATCCATTTTCTCCCT 40 621 116 Antisense
CTTCTCTCCCCACAATAAATCAAAT 575 219 147 Antisense
GAAAGTGTGTCTCCGCACAATGAGC 317 361 177 Antisense
ACAATGAGCAAAAGCGACCCGCACC 283 115 193 Antisense
TCCCACATCTACTAGTCAGCCAGGA 328 599 224 Antisense
TCAGCCAGGACGAAGCTCATCCATC 138 625 239 Antisense
AGCTCATCCATCTCTCAATAAGATC 601 79 252 Antisense
ATAAGATCATGTCTAACTTGCAACA 366 25 269 Antisense
TGAAGGACTCAAGACTCCGGTCTCC 422 569 300 Antisense
Sequence Source Affymetrix Proprietary Database