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[182465_at]

Description Y17D7B.3 /REP_DB=WormBase Gene ID /WP=CE16592 /TR=O45911 /GB=CAA16300.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 35.3
(3)
P 		24.8
(0.7)
A 		29.5
(1.7)
A 		7.9
(-3)
A 		27
B 31.8
(2.4)
A 		35.1
(3)
A 		4.3
(-3)
A 		5.4
(-2.8)
A 		31
C 22.2
(-1.1)
P 		7
(-2.7)
A 		3.6
(-3)
A 		61.9
(3)
A 		58
avr 29.8
(3) 		22.3
(0.4) 		12.5
(-3) 		25.1
(1.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 45.6
(3)
A 		40.7
(2.2)
A 		28.4
(0)
A 		10.9
(-3)
A 		19.6
(-1.5)
A 		11.8
(-2.8)
A 		35
B 48.6
(3)
P 		34.7
(1.2)
M 		28.2
(0.4)
A 		44.8
(2.5)
P 		2.3
(-3)
A 		13.5
(-1.5)
A 		46
C 14.2
(-1.5)
A 		48.3
(3)
P 		2.9
(-3)
A 		15.6
(-1.3)
A 		20.2
(-0.7)
A 		27
(0.2)
A 		45
avr 36.1
(1.9) 		41.2
(3) 		19.8
(-1.7) 		23.8
(-0.8) 		14
(-3) 		17.4
(-2.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.9
(3)
P 		5.4
(-0.8)
A 		7.7
(0.3)
A 		1.2
(-3)
A 		12
B 10.1
(3)
A 		8.7
(2.1)
A 		1
(-3)
A 		1.1
(-2.9)
A 		9
C 7.3
(1)
P 		2
(-2.5)
A 		1.3
(-3)
A 		10.4
(3)
A 		9
avr 10.1
(3) 		5.4
(-1.1) 		3.3
(-3) 		4.2
(-2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.4
(-0.1)
A 		14.5
(3)
A 		6.2
(-1.3)
A 		2.8
(-3)
A 		5.9
(-1.4)
A 		2.9
(-2.9)
A 		12
B 16.9
(3)
P 		11.5
(1)
M 		6.8
(-0.8)
A 		11.9
(1.1)
P 		0.9
(-3)
A 		5
(-1.5)
A 		16
C 5.3
(-1)
A 		14.7
(3)
P 		0.7
(-3)
A 		3.1
(-2)
A 		6.5
(-0.5)
A 		9.1
(0.6)
A 		14
avr 10.2
(0.8) 		13.6
(3) 		4.6
(-2.9) 		5.9
(-2) 		4.4
(-3) 		5.7
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14120
Sequence Type Exemplar sequence
Representative Public ID Y17D7B.3 NCBI
Target Description Y17D7B.3 /REP_DB=WormBase Gene ID /WP=CE16592 /TR=O45911 /GB=CAA16300.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075269 NCBI Caenorhabditis elegans Y17D7B.3 (Y17D7B.3) mRNA, complete cds. 11/11 None
GENEFINDER00000003528 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18783879:18789361:-1 11/11 None
Y17D7B.3 ENSEMBL cdna:known chromosome:CEL140:V:18787528:18789361:-1 gene:Y17D7B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18787527-18789361(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17D7B.3
Entrez Gene 189447 Entrez gene
SwissProt O45911 EMBL-EBI
WormBase CE16592 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16300 Hypothetical protein Y17D7B.3 [Caenorhabditis elegans] ref|NP_507670.1| Y17D7B.3 [Caenorhabditis elegans] 1.0E-115
blast CAA16300 Hypothetical protein Y17D7B.3 [Caenorhabditis elegans] ref|NP_507670.1| Y17D7B.3 [Caenorhabditis elegans] 1.0E-114
blast CAE56021 Hypothetical protein CBG23579 [Caenorhabditis briggsae] 6.0E-44
blast CAE56021 Hypothetical protein CBG23579 [Caenorhabditis briggsae] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:182465_AT
ccctccacattacttatcggctgtgaattcttcaaaaatcaagaaaagcttcgaaatttc
tgccgagcaaccgtactcggagcaggtttttagtggtgttggcagattttacggaccccg
aaattcgaaaaatgtgtggtctgagccgggagctatggaaattattagctataatatagt
gcaggagccaaaaaactaccggaaacggtttgcacatgactataggaaatggaaatggga
taggcatgattccacgtacattccaaaaggaaaattcgacccaaaaacgttgaagctaga
ctacaatgagtttttcgaggattttgatgaagaaattgaagtttttccgacaaattatgc
tgaaattgacgtacaaatggtcccaagtcagtattacaacttctcgaatcactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCCACATTACTTATCGGCTGTG 555 259 324 Antisense
GCTTCGAAATTTCTGCCGAGCAACC 240 307 371 Antisense
GAGCAACCGTACTCGGAGCAGGTTT 234 389 388 Antisense
GGAGCAGGTTTTTAGTGGTGTTGGC 330 521 402 Antisense
GTGTTGGCAGATTTTACGGACCCCG 649 483 419 Antisense
AAATGTGTGGTCTGAGCCGGGAGCT 472 113 453 Antisense
GGAAACGGTTTGCACATGACTATAG 266 527 524 Antisense
GGCATGATTCCACGTACATTCCAAA 333 537 566 Antisense
GAAGTTTTTCCGACAAATTATGCTG 461 337 661 Antisense
AATGGTCCCAAGTCAGTATTACAAC 9 163 699 Antisense
GTATTACAACTTCTCGAATCACTAT 9 451 714 Antisense
Sequence Source Affymetrix Proprietary Database