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[182464_s_at]

Description C55B6.2 /REP_DB=WormBase Gene ID /WP=CE09008 /TR=P91189 /GB=AAB42303.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_high_8_8 > 60      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 661
1 2 3 4 range
A 575.3
(1.4)
P 		700.7
(2.7)
P 		725.8
(3)
P 		154.8
(-3)
A 		571
B 631.4
(1.1)
A 		540
(0.1)
P 		815.3
(3)
P 		241.3
(-3)
P 		574
C 596.9
(1)
P 		561.1
(0.6)
P 		770.1
(3)
P 		243.1
(-3)
P 		527
avr 601.2
(1.2) 		600.6
(1.2) 		770.4
(3) 		213.1
(-3) 		557

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 630.4
(3)
P 		586.2
(2.1)
P 		410.4
(-1.5)
P 		510.8
(0.6)
P 		333.9
(-3)
P 		367.3
(-2.3)
P 		297
B 540
(1.7)
P 		556.8
(2)
P 		606.7
(3)
P 		507.3
(1)
P 		387
(-1.4)
P 		309.6
(-3)
P 		297
C 691.5
(3)
P 		473.2
(-0.9)
P 		542.3
(0.3)
P 		434
(-1.6)
P 		481.7
(-0.8)
P 		355.9
(-3)
P 		336
avr 620.6
(3) 		538.7
(1.2) 		519.8
(0.8) 		484
(0) 		400.9
(-1.8) 		344.3
(-3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 209.5
(3)
P 		152.1
(1.2)
P 		189.7
(2.4)
P 		22.7
(-3)
A 		187
B 201.3
(3)
A 		133.4
(0.3)
P 		188.9
(2.5)
P 		51.4
(-3)
P 		150
C 197.6
(1.1)
P 		161.3
(0.2)
P 		268.4
(3)
P 		41
(-3)
P 		227
avr 202.8
(2.6) 		148.9
(0.7) 		215.7
(3) 		38.4
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 116.2
(-1.6)
P 		208.5
(3)
P 		89.4
(-3)
P 		129.5
(-1)
P 		100.8
(-2.4)
P 		89.4
(-3)
P 		119
B 187.9
(3)
P 		185.4
(2.8)
P 		147.3
(-0.4)
P 		134.4
(-1.4)
P 		157.2
(0.5)
P 		115.5
(-3)
P 		72
C 256.3
(3)
P 		144.4
(-1)
P 		138
(-1.2)
P 		87.3
(-3)
P 		155.9
(-0.6)
P 		119.1
(-1.9)
P 		169
avr 186.8
(3) 		179.4
(2.4) 		124.9
(-1.7) 		117.1
(-2.3) 		138
(-0.7) 		108
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182464_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16909
Sequence Type Exemplar sequence
Representative Public ID C55B6.2 NCBI
Target Description C55B6.2 /REP_DB=WormBase Gene ID /WP=CE09008 /TR=P91189 /GB=AAB42303.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076808 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-7) (dnj-7) mRNA, complete cds. 11/11 None
SNAP00000023842 ENSEMBL cdna:SNAP chromosome:CEL140:X:7194528:7197241:1 10/11 None
GENEFINDER00000023846 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7194528:7197766:1 11/11 None
C55B6.2 ENSEMBL cdna:known chromosome:CEL140:X:7194510:7198227:1 gene:C55B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7194526-7197765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dnj-7
Ensembl C55B6.2
Entrez Gene 180983 Entrez gene
SwissProt P91189 EMBL-EBI
WormBase CE09008 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602404_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 3 cfa
CANINE:1594611_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 3 cfa
CANINE_2:CFA.16320.1.A1_S_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 3 cfa
CANINE_2:CFA.18789.1.S1_S_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 3 cfa
CANINE_2:CFA.7822.1.A1_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 3 cfa
CANINE_2:CFA.7822.1.A1_S_AT similar to DnaJ (Hsp40) homolog, subfamily C, member 3 cfa
DROSOPHILA_2:1641563_AT dm
DROSGENOME1:154335_AT dm
CHICKEN:GGA.16050.1.S1_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 gga
CHICKEN:GGA.9081.1.S1_AT DnaJ (Hsp40) homolog, subfamily C, member 3 gga
CHICKEN:GGAAFFX.13074.1.S1_AT DnaJ (Hsp40) homolog, subfamily C, member 3 gga
HG-U95AV2:33208_AT DnaJ (Hsp40) homolog, subfamily C, member 3 hs
HG-U133_PLUS_2:208499_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 hs
HG-U133A:208499_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 hs
HG-U133A_2:208499_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 hs
HU35KSUBD:RC_AA287317_AT DnaJ (Hsp40) homolog, subfamily C, member 3 hs
U133_X3P:G5453979_3P_A_AT DnaJ (Hsp40) homolog, subfamily C, member 3 hs
HG-U133_PLUS_2:233351_AT Hypothetical protein LOC144871 hs
HG-U133B:233351_AT Hypothetical protein LOC144871 hs
HG-U95B:41954_AT Hypothetical protein LOC144871 hs
HU35KSUBB:RC_AA004454_AT Hypothetical protein LOC144871 hs
HU35KSUBB:RC_R26390_AT Hypothetical protein LOC144871 hs
HU35KSUBC:RC_T17186_AT Hypothetical protein LOC144871 hs
U133_X3P:HS.65722.0.S1_3P_AT Hypothetical protein LOC144871 hs
U133_X3P:HS.60054.0.A1_3P_AT Hypothetical protein LOC144871 hs
U133_X3P:HS.149474.0.A1_3P_AT Hypothetical protein LOC144871 hs
HG-U133_PLUS_2:235341_AT Hypothetical protein LOC144871 hs
HG-U133B:235341_AT Hypothetical protein LOC144871 hs
HG-U133_PLUS_2:240574_AT Hypothetical protein LOC144871 hs
HG-U133B:240574_AT Hypothetical protein LOC144871 hs
HG-U95C:57648_AT Hypothetical protein LOC144871 hs
HG-U95D:80563_AT Hypothetical protein LOC144871 hs
HG-U95E:83454_AT Hypothetical protein LOC144871 hs
HG-U133_PLUS_2:239119_AT Hypothetical protein LOC144871 hs
HG-U133B:239119_AT Hypothetical protein LOC144871 hs
HG-U95B:55308_AT Hypothetical protein LOC144871 hs
HG-U95D:70356_AT Hypothetical protein LOC144871 hs
HG-U95E:82668_AT Hypothetical protein LOC144871 hs
HU35KSUBC:RC_W93064_AT Hypothetical protein LOC144871 hs
U133_X3P:HS.144849.0.A1_3P_AT Hypothetical protein LOC144871 hs
MU11KSUBB:MSA.2732.0_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MG-U74AV2:102415_R_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MG-U74AV2:102414_I_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MG-U74BV2:116699_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MOE430A:1419162_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MOUSE430A_2:1419162_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MOUSE430_2:1419162_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MOE430A:1449372_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MOUSE430A_2:1449372_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MOUSE430_2:1449372_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MU19KSUBB:TC34843_AT DnaJ (Hsp40) homolog, subfamily C, member 3 mm
MU11KSUBA:AA265871_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MG-U74AV2:94343_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MG-U74AV2:161868_R_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MG-U74BV2:164294_R_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOE430A:1433887_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOUSE430A_2:1433887_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOUSE430_2:1433887_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOE430A:1449373_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOUSE430A_2:1449373_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOUSE430_2:1449373_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOE430A:1419163_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOUSE430A_2:1419163_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MOUSE430_2:1419163_S_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MG-U74BV2:113781_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MU19KSUBC:TC34957_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
MU19KSUBC:TC39885_I_AT DnaJ (Hsp40) homolog, subfamily C, member 3, mRNA (cDNA clone MGC:6474 IMAGE:2646147) mm
RAE230A:1370073_AT protein kinase inhibitor p58 rn
RAT230_2:1370073_AT protein kinase inhibitor p58 rn
RAE230B:1381337_AT Protein kinase inhibitor p58 rn
RAT230_2:1381337_AT Protein kinase inhibitor p58 rn
RG-U34B:RC_AI029774_AT Protein kinase inhibitor p58 rn
Protein Similarities
Method ID Description E-Value
blast AAB42303 Dnaj domain (prokaryotic heat shock protein) protein 7 [Caenorhabditis elegans] ref|NP_509209.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-7) [Caenorhabditis elegans] 0.0
blast CAE65855 Hypothetical protein CBG10993 [Caenorhabditis briggsae] 0.0
blast AAF60776 Dnaj domain (prokaryotic heat shock protein) protein 28 [Caenorhabditis elegans] ref|NP_491084.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-28) [Caenorhabditis elegans] 1.0E-124
blast AAF60776 Dnaj domain (prokaryotic heat shock protein) protein 28 [Caenorhabditis elegans] ref|NP_491084.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-28) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 3.00000003404354E-18
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 2.00000009162741E-18
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 3.3E-30
Pfam IPR001440 EMBL-EBI TPR repeat 0.015
Pfam IPR001440 EMBL-EBI TPR repeat 8.8E-8
Pfam IPR001440 EMBL-EBI TPR repeat 1.0E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.3
Pfam IPR001440 EMBL-EBI TPR repeat 0.2
Pfam IPR001440 EMBL-EBI TPR repeat 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182464_S_AT
atcagtacaactcaacgtcttcagaataactaacaggtgtcaaagagaagcaggtcatat
cagtgaagctattgccgagtgcaatgaaatccttaatgatgacccatcagatgctgatat
tctctgcgaaagagctgaagcacatatcctcgatgaagattatgattcagccattgaaga
ttatcaaaaagcgactgaagttaacccagatcatcgagaggccaaggaaggtcttgagca
tgcgaagcgattaaaaacgcaggccggaaaaagagattactacaaaattcttggtgtaaa
acgaaatgcgagcaaacgcgaaattacaaaggcctaccgaaaacttgctcaaaagtggca
cccagacaacttctcagacgaggaggagaagaagaaggctgaaaagaaattcattgacat
tgcggccgctaaagaagttcttcaagacgaagagaaacgacgtcagttcgatcaaggagt
tgacccactggaccctgaggctcagagacaaggcggaggacatcacggaggatttggtca
cggctttccacacggattccatcattttggcggcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGTACAACTCAACGTCTTCAGA 444 25 873 Antisense
ATCAGTGAAGCTATTGCCGAGTGCA 462 27 931 Antisense
GAGCTGAAGCACATATCCTCGATGA 500 387 1004 Antisense
GTTAACCCAGATCATCGAGAGGCCA 304 445 1072 Antisense
GAAGGTCTTGAGCATGCGAAGCGAT 565 333 1099 Antisense
CAAAGGCCTACCGAAAACTTGCTCA 219 193 1199 Antisense
CACCCAGACAACTTCTCAGACGAGG 266 201 1231 Antisense
ATTCATTGACATTGCGGCCGCTAAA 491 11 1281 Antisense
GATCAAGGAGTTGACCCACTGGACC 445 421 1342 Antisense
CCACTGGACCCTGAGGCTCAGAGAC 208 273 1357 Antisense
CGGATTCCATCATTTTGGCGGCGGT 685 243 1425 Antisense
Sequence Source Affymetrix Proprietary Database