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[182463_s_at]

Description H40L08.1 /REP_DB=WormBase Gene ID /WP=CE16188 /TR=O45628 /GB=CAB08561.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 10      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 62      6grp_total > 41      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 309.9
(-3)
P 		435.6
(1.7)
P 		470.8
(3)
P 		413.9
(0.9)
P 		161
B 398.8
(-3)
P 		487.8
(3)
P 		463.5
(1.4)
P 		398.1
(-3)
P 		90
C 418
(-1.2)
P 		542.2
(3)
P 		482.2
(0.9)
P 		366.6
(-3)
P 		176
avr 375.6
(-3) 		488.5
(3) 		472.2
(2.1) 		392.9
(-2.1) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 538
(2.3)
P 		530.8
(2.1)
P 		554.6
(3)
P 		551.8
(2.9)
P 		545
(2.6)
P 		404
(-3)
P 		151
B 533
(1.1)
P 		491.1
(0.3)
P 		584.9
(2.1)
P 		635.6
(3)
P 		479.3
(0.1)
P 		310.9
(-3)
P 		325
C 602.3
(3)
P 		520.7
(0.9)
P 		505.3
(0.6)
P 		544.6
(1.5)
P 		364.3
(-3)
P 		379.7
(-2.6)
P 		238
avr 557.8
(2.4) 		514.2
(1.2) 		548.3
(2.2) 		577.3
(3) 		462.9
(-0.2) 		364.9
(-3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 112.8
(2)
P 		94.6
(0.3)
P 		123.1
(3)
P 		60.6
(-3)
P 		63
B 127.2
(3)
P 		120.5
(2.1)
P 		107.4
(0.2)
P 		84.8
(-3)
P 		42
C 138.4
(1.3)
P 		155.9
(2.3)
P 		168
(3)
P 		61.8
(-3)
P 		106
avr 126.1
(2.4) 		123.7
(2.1) 		132.8
(3) 		69.1
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 99.2
(-2.9)
P 		188.8
(3)
P 		120.8
(-1.5)
P 		140
(-0.2)
P 		164.4
(1.4)
P 		98.4
(-3)
P 		90
B 185.4
(2.3)
P 		163.5
(0.6)
P 		142
(-1)
P 		168.3
(1)
P 		194.7
(3)
P 		115.9
(-3)
P 		79
C 223.2
(3)
P 		158.9
(-0.4)
P 		128.6
(-2)
P 		109.5
(-3)
P 		117.9
(-2.6)
P 		127.1
(-2.1)
P 		114
avr 169.3
(2.9) 		170.4
(3) 		130.5
(-1.2) 		139.3
(-0.3) 		159
(1.8) 		113.8
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182463_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18055
Sequence Type Exemplar sequence
Representative Public ID H40L08.1 NCBI
Target Description H40L08.1 /REP_DB=WormBase Gene ID /WP=CE16188 /TR=O45628 /GB=CAB08561.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078105 NCBI Caenorhabditis elegans H40L08.1 (H40L08.1) mRNA, complete cds. 11/11 None
SNAP00000002252 ENSEMBL cdna:SNAP chromosome:CEL140:X:15080966:15083788:-1 11/11 None
GENEFINDER00000002254 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15080966:15083788:-1 11/11 None
H40L08.1 ENSEMBL cdna:known chromosome:CEL140:X:15080701:15083878:-1 gene:H40L08.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15080965-15083788(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H40L08.1
Entrez Gene 181603 Entrez gene
SwissProt O45628 EMBL-EBI
WormBase CE16188 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB08561 Hypothetical protein H40L08.1 [Caenorhabditis elegans] ref|NP_510506.1| H40L08.1 [Caenorhabditis elegans] 0.0
blast CAE63263 Hypothetical protein CBG07636 [Caenorhabditis briggsae] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 4.1E-7
Sequence
Target Sequence 
>C. ELEGANS:182463_S_AT
aaaattgctcatcgatgacctctccaatcctgagtccgtcagcaccaacattgacttggc
tcttattgatctgattgccgacgatgcggatcgttcagcgagaaaccgagttcaaaatga
gtctcgacgactcatggaagagcaaaatcgggagtaccaggaaagcttacagcgtgattt
ggaacgtattgcgaagagcaagtctgaagaagaagctgcaaagaaagctcaggaagaaga
agaacaaaagcaacgagatgccgaggagcgtcttaatactgtcgagacttacaaaagaac
catctccggtgacacaactctatcgactggatcacacgatcttctcatccgattcccaac
gggcaaaaaagtgatcaagttcaacgctgacgataatattgaaaagatctttgatgaagc
tatgaagtcggaaatgtgcccactgttcttccagatgcaccagagtttcccgaagaaagc
tgtcccgtgcctgccaaaatggtactttgagattctctcggcggaggagcttgagccaaa
atccgagtgcctctcgaataacctcacgtttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTGCTCATCGATGACCTCTCC 52 135 726 Antisense
TGAGTCCGTCAGCACCAACATTGAC 643 565 756 Antisense
GCAACGAGATGCCGAGGAGCGTCTT 191 321 975 Antisense
GTGACACAACTCTATCGACTGGATC 306 481 1034 Antisense
GACTGGATCACACGATCTTCTCATC 143 377 1050 Antisense
TCTCATCCGATTCCCAACGGGCAAA 635 611 1068 Antisense
TGAAGTCGGAAATGTGCCCACTGTT 299 573 1148 Antisense
GTTCTTCCAGATGCACCAGAGTTTC 587 443 1170 Antisense
AGATTCTCTCGGCGGAGGAGCTTGA 558 65 1235 Antisense
TTGAGCCAAAATCCGAGTGCCTCTC 387 697 1256 Antisense
CCTCTCGAATAACCTCACGTTTCAA 9 267 1275 Antisense
Sequence Source Affymetrix Proprietary Database