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[182462_at]

Description T05E7.3 /REP_DB=WormBase Gene ID /WP=CE13235 /TR=O01858 /GB=AAB54215.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 31      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 291.6
(3)
P 		132.3
(-3)
A 		144.4
(-2.5)
A 		246.6
(1.3)
P 		159
B 252.9
(3)
P 		184.8
(-2.7)
A 		180.9
(-3)
P 		231.3
(1.2)
P 		72
C 281.3
(3)
P 		182.2
(-2)
A 		163.2
(-3)
P 		187.2
(-1.8)
P 		118
avr 275.3
(3) 		166.4
(-2.8) 		162.8
(-3) 		221.7
(0.1) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 216.3
(-3)
P 		308.3
(-0.1)
P 		240.6
(-2.2)
P 		335.9
(0.8)
P 		347.7
(1.2)
P 		403.5
(3)
P 		187
B 178.7
(-3)
P 		240.2
(-0.5)
P 		327
(3)
P 		285.6
(1.3)
P 		286.3
(1.4)
P 		310.1
(2.3)
P 		148
C 242.5
(-1.8)
P 		207.5
(-3)
P 		262.1
(-1.1)
P 		292.7
(-0.1)
P 		232.5
(-2.1)
P 		382.9
(3)
P 		175
avr 212.5
(-3) 		252
(-1.5) 		276.6
(-0.5) 		304.7
(0.6) 		288.8
(-0) 		365.5
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 106.2
(3)
P 		28.7
(-3)
A 		37.8
(-2.3)
A 		36.1
(-2.4)
P 		78
B 80.6
(3)
P 		45.6
(-2.4)
A 		41.9
(-3)
P 		49.3
(-1.9)
P 		39
C 93.1
(3)
P 		52.4
(-1)
A 		56.9
(-0.5)
P 		31.6
(-3)
P 		62
avr 93.3
(3) 		42.2
(-2.6) 		45.5
(-2.3) 		39
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 39.9
(-3)
P 		109.6
(3)
P 		52.4
(-1.9)
P 		85.2
(0.9)
P 		104.9
(2.6)
P 		98.2
(2)
P 		70
B 62.2
(-3)
P 		79.9
(-1)
P 		79.4
(-1.1)
P 		75.6
(-1.5)
P 		116.3
(3)
P 		115.6
(2.9)
P 		54
C 89.9
(-0.3)
P 		63.3
(-2.6)
P 		66.7
(-2.3)
P 		58.9
(-3)
P 		75.2
(-1.6)
P 		128.2
(3)
P 		69
avr 64
(-3) 		84.3
(-0.6) 		66.2
(-2.7) 		73.2
(-1.9) 		98.8
(1.2) 		114
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1071
Sequence Type Exemplar sequence
Representative Public ID T05E7.3 NCBI
Target Description T05E7.3 /REP_DB=WormBase Gene ID /WP=CE13235 /TR=O01858 /GB=AAB54215.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059383 NCBI Caenorhabditis elegans T05E7.3 (T05E7.3) mRNA, complete cds. 11/11 None
SNAP00000044424 ENSEMBL cdna:SNAP chromosome:CEL140:I:6196307:6200587:1 11/11 None
GENEFINDER00000044431 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6196307:6200587:1 11/11 None
T05E7.3 ENSEMBL cdna:known chromosome:CEL140:I:6196294:6200751:1 gene:T05E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6196235-6200516(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E7.3
Entrez Gene 172306 Entrez gene
SwissProt O01858 EMBL-EBI
WormBase CE13235 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20275.1.S1_AT similar to Protein KIAA0196 cfa
CANINE_2:CFAAFFX.2484.1.S1_S_AT similar to Protein KIAA0196 cfa
DROSOPHILA_2:1639938_AT dm
DROSGENOME1:148848_AT dm
CHICKEN:GGAAFFX.10448.1.S1_AT similar to Protein KIAA0196 gga
CHICKEN:GGAAFFX.10448.2.S1_S_AT similar to Protein KIAA0196 gga
HG-U133A:201985_AT KIAA0196 hs
HG-U133_PLUS_2:201985_AT KIAA0196 hs
HG-U133A_2:201985_AT KIAA0196 hs
HUGENEFL:D83780_AT KIAA0196 hs
U133_X3P:G7661987_3P_AT KIAA0196 hs
HG-U95AV2:38419_AT KIAA0196 hs
HG-U95D:68576_AT KIAA0196 hs
HG-U95D:68578_G_AT KIAA0196 hs
HG-U95D:86047_AT KIAA0196 hs
MG-U74BV2:111846_AT RIKEN cDNA E430025E21 gene mm
MOE430B:1434132_AT RIKEN cDNA E430025E21 gene mm
MOUSE430_2:1434132_AT RIKEN cDNA E430025E21 gene mm
MU19KSUBB:TC31622_AT RIKEN cDNA E430025E21 gene (E430025E21Rik), mRNA mm
RG-U34C:RC_AI111828_AT similar to Hypothetical protein MGC31278 rn
RAE230A:1389559_AT similar to Hypothetical protein MGC31278 rn
RAT230_2:1389559_AT similar to Hypothetical protein MGC31278 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54215 Hypothetical protein T05E7.3 [Caenorhabditis elegans] ref|NP_491784.1| T05E7.3 [Caenorhabditis elegans] 0.0
blast CAE67132 Hypothetical protein CBG12554 [Caenorhabditis briggsae] 0.0
blast XP_636646 hypothetical protein DDB0187996 [Dictyostelium discoideum] gb|EAL63144.1| hypothetical protein DDB0187996 [Dictyostelium discoideum] 3.0E-57
Sequence
Target Sequence 
>C. ELEGANS:182462_AT
atcggagtcagcttcaatcttcagaattctgtgactcacgagtctgcgtttcaattcttc
actggtcctaactatgagagactcgttaaatcaattcaaccacaatctgcagccttggca
gccattctagctcaaattggtcaatacttgatcatacttcgaacaatctgcaacgctaaa
caactcgctaaccggcacaaagaggacagtatccaaagagatttgattgaaatgagcata
tcaatggcacgtgatccaactgatctaccaaccgaaatgggcactattttgaagcttatg
atgcagtattcgttgtatgatcccgaacgaatgatctttagactcaaagatgaaccatct
cctttgtttataattgctctcgttcagtgcctactgcctaaaattggagatccatatttt
gtctgcccaaagcaactggaagttggaattcgattcgttctccgtcaatctcgacttctc
ccatattttcttccaatcattcgcgagcaacttccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGAGTCAGCTTCAATCTTCAGA 355 35 2419 Antisense
GACTCACGAGTCTGCGTTTCAATTC 624 373 2451 Antisense
GTTTCAATTCTTCACTGGTCCTAAC 408 449 2466 Antisense
CAATCTGCAGCCTTGGCAGCCATTC 262 181 2521 Antisense
GCAGCCATTCTAGCTCAAATTGGTC 247 315 2536 Antisense
ATCCAACTGATCTACCAACCGAAAT 210 41 2672 Antisense
AGATGAACCATCTCCTTTGTTTATA 240 67 2766 Antisense
TATAATTGCTCTCGTTCAGTGCCTA 69 661 2787 Antisense
GATCCATATTTTGTCTGCCCAAAGC 6 417 2827 Antisense
TGGAATTCGATTCGTTCTCCGTCAA 87 547 2862 Antisense
AATCATTCGCGAGCAACTTCCACAA 254 171 2913 Antisense
Sequence Source Affymetrix Proprietary Database