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[182461_s_at] --- /// --- /// ---

Description F07C7.1 /REP_DB=WormBase Gene ID /WP=CE07032 /TR=Q19161 /GB=AAA85753.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 33.7
(-0.2)
A 		61.6
(3)
A 		9.8
(-3)
A 		39.6
(0.5)
A 		52
B 21.5
(0.7)
A 		14.9
(-1.6)
A 		10.8
(-3)
A 		28.1
(3)
A 		17
C 20.3
(-2.1)
A 		9.9
(-3)
A 		32.3
(-1)
A 		77.7
(3)
A 		68
avr 25.2
(-1.5) 		28.8
(-0.8) 		17.6
(-3) 		48.5
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 26.5
(2.1)
A 		7
(-3)
A 		19.6
(0.3)
A 		9.6
(-2.3)
A 		29.8
(3)
A 		8.4
(-2.6)
A 		23
B 37.8
(3)
A 		29
(1.3)
A 		7.6
(-2.8)
A 		7.8
(-2.7)
A 		6.4
(-3)
A 		18.5
(-0.7)
A 		31
C 7.2
(-3)
A 		25.6
(0.5)
A 		9.5
(-2.6)
A 		10.6
(-2.4)
A 		8
(-2.8)
A 		39
(3)
P 		32
avr 23.8
(3) 		20.5
(1.6) 		12.2
(-1.8) 		9.3
(-3) 		14.7
(-0.8) 		22
(2.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.3
(2.4)
A 		13.4
(3)
A 		2.6
(-3)
A 		5.8
(-1.2)
A 		11
B 6.8
(3)
A 		3.7
(-1.3)
A 		2.5
(-3)
A 		6
(1.9)
A 		4
C 6.7
(-0.8)
A 		2.9
(-3)
A 		11.3
(1.9)
A 		13.1
(3)
A 		10
avr 8.6
(3) 		6.7
(-0.7) 		5.5
(-3) 		8.3
(2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.9
(-0.6)
A 		2.5
(-2.7)
A 		4.3
(-1.1)
A 		2.4
(-2.7)
A 		9
(3)
A 		2.1
(-3)
A 		7
B 13.2
(3)
A 		9.7
(1.1)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		2.6
(-2.6)
A 		6.9
(-0.3)
A 		11
C 2.7
(-2.7)
A 		7.8
(0.1)
A 		2.4
(-2.8)
A 		2.1
(-3)
A 		2.6
(-2.7)
A 		13.1
(3)
P 		11
avr 6.9
(2.4) 		6.7
(2.2) 		2.9
(-2.2) 		2.2
(-3) 		4.7
(-0.1) 		7.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182461_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16510
Sequence Type Exemplar sequence
Representative Public ID F07C7.1 NCBI
Target Description F07C7.1 /REP_DB=WormBase Gene ID /WP=CE07032 /TR=Q19161 /GB=AAA85753.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072783(11), NM_077151(11), NM_072785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072783 NCBI Caenorhabditis elegans T23B12.9 (T23B12.9) mRNA, complete cds. 11/11 A 
NM_077151 NCBI Caenorhabditis elegans F07C7.1 (F07C7.1) mRNA, complete cds. 11/11 A 
NM_072785 NCBI Caenorhabditis elegans T24H5.1 (T24H5.1) mRNA, complete cds. 11/11 A 
SNAP00000022128 ENSEMBL cdna:SNAP chromosome:CEL140:V:8489917:8490936:1 11/11 None
GENEFINDER00000022136 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8489917:8490936:1 11/11 None
SNAP00000042006 ENSEMBL cdna:SNAP chromosome:CEL140:V:8478211:8479839:-1 11/11 None
GENEFINDER00000042014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8478211:8480383:-1 11/11 None
SNAP00000037952 ENSEMBL cdna:SNAP chromosome:CEL140:X:9200848:9202976:1 10/11 None
GENEFINDER00000037960 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9200848:9202976:1 11/11 None
T23B12.9 ENSEMBL cdna:known chromosome:CEL140:V:8478211:8484485:-1 gene:T23B12.9 11/11 A 
T24H5.1 ENSEMBL cdna:known chromosome:CEL140:V:8489692:8490936:1 gene:T24H5.1 11/11 A 
F07C7.1 ENSEMBL cdna:known chromosome:CEL140:X:9196001:9202976:1 gene:F07C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title


Ensembl T23B12.9
T24H5.1
F07C7.1
Entrez Gene 184139 Entrez gene
188779 Entrez gene
188868 Entrez gene
SwissProt Q19161 EMBL-EBI
O17008 EMBL-EBI
Q966F1 EMBL-EBI
WormBase CE07032 Wormbase
CE14042 Wormbase
CE26008 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69941 Hypothetical protein T23B12.9 [Caenorhabditis elegans] ref|NP_505184.1| T23B12.9 [Caenorhabditis elegans] 0.0
blast AAA85753 Hypothetical protein F07C7.1 [Caenorhabditis elegans] ref|NP_509552.1| F07C7.1 [Caenorhabditis elegans] 0.0
blast AAK84578 Hypothetical protein T24H5.1 [Caenorhabditis elegans] ref|NP_505186.1| T24H5.1 [Caenorhabditis elegans] 0.0
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-27
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 8.9E-76
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.6E-12
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 3.2E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 1.7E-74
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.034
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-27
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-27
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 7.9E-10
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.9E-30
Sequence
Target Sequence 
>C. ELEGANS:182461_S_AT
gtacaggacctgacaacgacactcccgccaacgacaccaacaacgacacggacaaggaca
ccgctggcagcgaccagtgcagaccctgccccacactgcccacaccagcactcttagatt
tcgaaaactcacactttgcgcggcgttcccagcccaaattctcccgaacatcggtgaaga
acctagagatatcactctggataggacccgactacgatactaacaatccactcttccacg
aagatggggaggctgaagacagaccagttgagtacgtggaccccatcacggcgatccccg
agatagcttacgacaacgcagagaccagactgccacaaggtcgtactagagaatatctcg
gtcgaaaagctaaggccccgtacatcaactacaatcacgccgagattactcgcgtcttgt
cggatccttcacccccggaatgttgtcgattccccgtaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAGGACCTGACAACGACACTCC 152 461 5159 Antisense
GACACCAACAACGACACGGACAAGG 157 369 5191 Antisense
CGACACGGACAAGGACACCGCTGGC 608 251 5202 Antisense
CCACACCAGCACTCTTAGATTTCGA 532 275 5258 Antisense
AATTCTCCCGAACATCGGTGAAGAA 172 173 5315 Antisense
GAACCTAGAGATATCACTCTGGATA 111 347 5337 Antisense
TCTCGGTCGAAAAGCTAAGGCCCCG 514 235 5514 Antisense
TCAACTACAATCACGCCGAGATTAC 70 631 5543 Antisense
CGCCGAGATTACTCGCGTCTTGTCG 406 255 5556 Antisense
TCACCCCCGGAATGTTGTCGATTCC 192 595 5587 Antisense
GGAATGTTGTCGATTCCCCGTAATC 506 531 5595 Antisense
Sequence Source Affymetrix Proprietary Database