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[182460_at]

Description F07C7.1 /REP_DB=WormBase Gene ID /WP=CE07032 /TR=Q19161 /GB=AAA85753.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 3.2
(-2.1)
A 		5.6
(3)
A 		3.9
(-0.6)
A 		2.8
(-3)
A 		3
B 3.9
(-2.7)
A 		5.9
(-1)
A 		10.6
(3)
A 		3.5
(-3)
A 		7
C 26.8
(3)
A 		4.8
(-2.7)
A 		5.9
(-2.4)
A 		3.6
(-3)
A 		23
avr 11.3
(3) 		5.4
(-1.4) 		6.8
(-0.4) 		3.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.8
(-2.5)
A 		4.5
(-2)
A 		2.9
(-3)
A 		4.1
(-2.3)
A 		13
(3)
A 		9.2
(0.7)
A 		10
B 4.1
(-2.3)
A 		4.1
(-2.3)
A 		14.8
(3)
A 		6.1
(-1.3)
A 		4
(-2.4)
A 		2.7
(-3)
A 		12
C 4.7
(-1.9)
A 		4.6
(-2)
A 		5.2
(-1.7)
A 		17
(3)
A 		2
(-3)
A 		3.1
(-2.6)
A 		15
avr 4.2
(-3) 		4.4
(-2.8) 		7.6
(1.2) 		9.1
(3) 		6.3
(-0.4) 		5
(-2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(3)
A 		1.2
(3)
A 		1
(1.5)
A 		0.4
(-3)
A 		1
B 1.2
(-1.3)
A 		1.4
(-0.7)
A 		2.5
(3)
A 		0.7
(-3)
A 		2
C 8.9
(3)
A 		1.4
(-2.4)
A 		2.1
(-1.9)
A 		0.6
(-3)
A 		8
avr 3.8
(3) 		1.3
(-1.7) 		1.9
(-0.6) 		0.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		1.6
(-1.2)
A 		0.6
(-3)
A 		1
(-2.3)
A 		3.9
(3)
A 		2.2
(-0.1)
A 		3
B 1.4
(-2.1)
A 		1.4
(-2.1)
A 		3.6
(3)
A 		1.6
(-1.6)
A 		1.6
(-1.6)
A 		1
(-3)
A 		3
C 1.8
(-0.6)
A 		1.4
(-1.4)
A 		1.3
(-1.7)
A 		3.4
(3)
A 		0.7
(-3)
A 		1.1
(-2.1)
A 		3
avr 1.3
(-3) 		1.5
(-1.5) 		1.8
(0.8) 		2
(2.3) 		2.1
(3) 		1.4
(-2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16510
Sequence Type Exemplar sequence
Representative Public ID F07C7.1 NCBI
Target Description F07C7.1 /REP_DB=WormBase Gene ID /WP=CE07032 /TR=Q19161 /GB=AAA85753.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077151 NCBI Caenorhabditis elegans F07C7.1 (F07C7.1) mRNA, complete cds. 11/11 A 
SNAP00000037952 ENSEMBL cdna:SNAP chromosome:CEL140:X:9200848:9202976:1 9/11 None
GENEFINDER00000037960 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9200848:9202976:1 11/11 None
F07C7.1 ENSEMBL cdna:known chromosome:CEL140:X:9196001:9202976:1 gene:F07C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F07C7.1
Entrez Gene 184139 Entrez gene
SwissProt Q19161 EMBL-EBI
WormBase CE07032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85753 Hypothetical protein F07C7.1 [Caenorhabditis elegans] ref|NP_509552.1| F07C7.1 [Caenorhabditis elegans] 0.0
blast AAB69941 Hypothetical protein T23B12.9 [Caenorhabditis elegans] ref|NP_505184.1| T23B12.9 [Caenorhabditis elegans] 0.0
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 3.2E-6
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 1.7E-74
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.034
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 7.9E-10
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.9E-30
Sequence
Target Sequence 
>C. ELEGANS:182460_AT
cgccaggacattcgacacggtacaggacctgacaacgacactcccgccaacgacaccaac
aacgacacggacaaggacaccgctggcagcgaccagtgcagaccctgccccacactgccc
acaccagcactcttagatttcgaaaactcacactttgcgcggcgttcccagcccaaattc
tcccgaacatcggtgaagaacctagagatatcactctggataggacccgactacgatact
aacaatccactcttccacgaagatggggaggctgaagacagaccagttgagtacgtggac
cccatcacggcgatccccgagatagcttacgacaacgcagagaccagactgccacaaggt
cgtacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCAGGACATTCGACACGGTACAG 308 255 5140 Antisense
AGGACATTCGACACGGTACAGGACC 336 15 5144 Antisense
ACTCTGGATAGGACCCGACTACGAT 328 97 5352 Antisense
GATAGGACCCGACTACGATACTAAC 57 425 5358 Antisense
ACGATACTAACAATCCACTCTTCCA 356 93 5372 Antisense
TAACAATCCACTCTTCCACGAAGAT 192 639 5379 Antisense
CCACGAAGATGGGGAGGCTGAAGAC 444 273 5394 Antisense
AGTTGAGTACGTGGACCCCATCACG 273 63 5424 Antisense
GATCCCCGAGATAGCTTACGACAAC 705 415 5451 Antisense
GCTTACGACAACGCAGAGACCAGAC 251 305 5464 Antisense
ACCAGACTGCCACAAGGTCGTACTA 608 83 5482 Antisense
Sequence Source Affymetrix Proprietary Database