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[182459_at]

Description F40G9.1 /REP_DB=WormBase Gene ID /WP=CE19848 /TR=Q9TZ67 /GB=AAC68798.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 11.4
(-3)
A 		13.7
(-1.8)
A 		15.5
(-0.9)
A 		23.2
(3)
A 		12
B 11.6
(-3)
A 		38.7
(-0.2)
A 		69.1
(3)
A 		25.9
(-1.5)
A 		58
C 15.2
(-2.2)
A 		31.6
(2.7)
A 		12.4
(-3)
A 		32.6
(3)
A 		20
avr 12.7
(-3) 		28
(1.7) 		32.3
(3) 		27.2
(1.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 4.6
(-3)
A 		12.4
(-2.1)
A 		50.3
(2)
A 		59.1
(3)
A 		16.8
(-1.7)
A 		51.8
(2.2)
A 		55
B 1.6
(-3)
A 		31.5
(0.6)
A 		26.6
(-0)
A 		51.9
(3)
A 		38.6
(1.4)
A 		13.8
(-1.5)
A 		50
C 20.6
(-0.9)
A 		45
(3)
A 		14.7
(-1.9)
A 		40.7
(2.3)
A 		7.7
(-3)
A 		33.6
(1.2)
A 		37
avr 8.9
(-3) 		29.6
(-0) 		30.5
(0.1) 		50.6
(3) 		21
(-1.3) 		33.1
(0.5) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.1
(3)
A 		3
(-3)
A 		4.1
(3)
A 		3.4
(-0.8)
A 		1
B 3.7
(-3)
A 		9.5
(-0.2)
A 		16
(3)
A 		5.5
(-2.1)
A 		12
C 5
(-2.1)
A 		9.1
(3)
A 		4.3
(-3)
A 		5.5
(-1.5)
A 		5
avr 4.3
(-3) 		7.2
(1.6) 		8.1
(3) 		4.8
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.8
(-3)
A 		4.4
(-1.5)
A 		11
(1.3)
A 		15
(3)
A 		5.1
(-1.2)
A 		12.6
(2)
A 		14
B 0.5
(-3)
A 		10.5
(0.9)
A 		6.5
(-0.6)
A 		13.7
(2.2)
A 		15.7
(3)
A 		5.2
(-1.1)
A 		15
C 7.6
(-0.3)
A 		13.7
(3)
A 		3.7
(-2.4)
A 		8.2
(0.1)
A 		2.5
(-3)
A 		11.2
(1.7)
A 		11
avr 3
(-3) 		9.5
(1.2) 		7.1
(-0.4) 		12.3
(3) 		7.8
(0.1) 		9.7
(1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8205
Sequence Type Exemplar sequence
Representative Public ID F40G9.1 NCBI
Target Description F40G9.1 /REP_DB=WormBase Gene ID /WP=CE19848 /TR=Q9TZ67 /GB=AAC68798.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064775 NCBI Caenorhabditis elegans F40G9.1 (F40G9.1) mRNA, complete cds. 11/11 None
SNAP00000004118 ENSEMBL cdna:SNAP chromosome:CEL140:III:195426:200194:1 10/11 None
GENEFINDER00000004119 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:197125:200223:1 9/11 None
F40G9.1 ENSEMBL cdna:known chromosome:CEL140:III:192132:200223:1 gene:F40G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:192131-200223(+) 97.75 97.75
Public Domain and Genome References
Gene Title
Ensembl F40G9.1
Entrez Gene 175187 Entrez gene
SwissProt Q9TZ67 EMBL-EBI
WormBase CE19848 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17318_AT ankyrin repeat family protein at
ATH1-121501:265703_AT ankyrin repeat family protein at
CANINE:1600791_AT similar to 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin) cfa
CANINE:1593906_S_AT similar to 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin) cfa
CANINE_2:CFA.678.1.A1_AT similar to 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin) cfa
CANINE_2:CFAAFFX.27575.1.S1_AT similar to 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin) cfa
CANINE_2:CFAAFFX.27575.1.S1_S_AT similar to 26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28) (Gankyrin) cfa
CHICKEN:GGA.12265.1.S1_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 gga
HG-U133_PLUS_2:219485_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HG-U133A:219485_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HG-FOCUS:219485_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HG-U133A_2:219485_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HU35KSUBA:AA203428_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HU35KSUBA:RC_AA460532_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
U133_X3P:G4506216_3P_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
U133_X3P:HS2.7756.2.S1_3P_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HG-U133_PLUS_2:1554577_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HG-U95AV2:37350_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
HG-U95C:64301_R_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 hs
MOUSE430_2:1436559_A_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MOUSE430A_2:1436559_A_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MOE430A:1436559_A_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MU11KSUBB:MSA.22505.0_F_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MU11KSUBB:MSA.21008.0_F_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MG-U74AV2:103319_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MG-U74CV2:165754_I_AT proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 mm
MU19KSUBB:TC29346_AT Proteosome (prosome, macropain) 26S subunit, non-ATPase, 10, mRNA (cDNA clone MGC:25570 IMAGE:3987112) mm
MU19KSUBC:TC37685_AT Proteosome (prosome, macropain) 26S subunit, non-ATPase, 10, mRNA (cDNA clone MGC:25570 IMAGE:3987112) mm
YEAST_2:1772234_AT Regulatory, non-ATPase subunit of the 26S proteasome; homolog of the human oncoprotein gankyrin, which interacts with the retinoblastoma tumor suppressor (Rb) and cyclin-dependent kinase 4/6 Sc
Protein Similarities
Method ID Description E-Value
blast AAC68798 Hypothetical protein F40G9.1 [Caenorhabditis elegans] ref|NP_497176.1| F40G9.1 [Caenorhabditis elegans] 0.0
blast AAC68798 Hypothetical protein F40G9.1 [Caenorhabditis elegans] ref|NP_497176.1| F40G9.1 [Caenorhabditis elegans] 2.0E-81
blast AAC68798 Hypothetical protein F40G9.1 [Caenorhabditis elegans] ref|NP_497176.1| F40G9.1 [Caenorhabditis elegans] 2.0E-80
blast CAE69514 Hypothetical protein CBG15723 [Caenorhabditis briggsae] 5.0E-65
blast CAE69514 Hypothetical protein CBG15723 [Caenorhabditis briggsae] 9.0E-63
blast CAE69514 Hypothetical protein CBG15723 [Caenorhabditis briggsae] 9.0E-60
blast CAE69515 Hypothetical protein CBG15724 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.3E-8
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-5
Pfam IPR002110 EMBL-EBI Ankyrin 4.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.1
Pfam IPR002110 EMBL-EBI Ankyrin 4.3E-8
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-5
Pfam IPR002110 EMBL-EBI Ankyrin 4.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 9.0E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.3E-8
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-5
Pfam IPR002110 EMBL-EBI Ankyrin 4.0E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497176.1 1 238-260
F40G9.1 1 238-260
Sequence
Target Sequence 
>C. ELEGANS:182459_AT
aattgtttgattttgccactcggctggacccctctgatgattgccagttcggcaggtcgt
gtcgacgtggtcaggtacttgctgacgcttccggatgttgatgtgaagcatactaatagt
aataagcagacgagtcttcactatgcgtgcagcaaaaaccacgttgaaatcgtcaaattg
ctcatcgaagccgacccaaacattatcaatttgccagacaaattcggagcaactgcgctc
caccgagccgcaagtcgtggaaatgacgtcatcgtccgggcgctggtctcgactggaaaa
tgtagtttggatcggcaggatggagagggaaatacggcattacacctcgcgtgtgacgaa
aaccgtggtgacgtggcaattctgctggtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTTTGATTTTGCCACTCGGCT 641 177 1429 Antisense
CTGGACCCCTCTGATGATTGCCAGT 365 241 1452 Antisense
GATTGCCAGTTCGGCAGGTCGTGTC 298 433 1467 Antisense
GTGTCGACGTGGTCAGGTACTTGCT 209 487 1487 Antisense
TGCTGACGCTTCCGGATGTTGATGT 340 583 1508 Antisense
GCAGACGAGTCTTCACTATGCGTGC 175 313 1554 Antisense
CATCGAAGCCGACCCAAACATTATC 19 211 1611 Antisense
CTCCACCGAGCCGCAAGTCGTGGAA 174 235 1666 Antisense
GGAAATACGGCATTACACCTCGCGT 2 527 1756 Antisense
ACACCTCGCGTGTGACGAAAACCGT 109 109 1770 Antisense
GGTGACGTGGCAATTCTGCTGGTGA 23 501 1795 Antisense
Sequence Source Affymetrix Proprietary Database