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[182458_at]

Description F41F3.1 /REP_DB=WormBase Gene ID /WP=CE07215 /TR=Q20283 /GB=AAA97983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 22.1
(-2.4)
A 		11.6
(-3)
A 		23.2
(-2.4)
A 		125.3
(3)
P 		114
B 41.3
(3)
A 		3.4
(-2.6)
A 		1
(-3)
A 		35.7
(2.2)
A 		40
C 4.3
(-3)
A 		16.8
(-2.1)
A 		6.2
(-2.9)
A 		92.4
(3)
A 		88
avr 22.6
(-2) 		10.6
(-3) 		10.1
(-3) 		84.5
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 5.3
(-3)
A 		38
(0.7)
A 		16.2
(-1.8)
A 		27.3
(-0.5)
A 		57.8
(3)
A 		38.2
(0.8)
A 		53
B 21.2
(-1.4)
A 		10.1
(-2.5)
A 		28.3
(-0.6)
A 		5.9
(-3)
A 		13.3
(-2.2)
A 		61.7
(3)
A 		56
C 22.4
(-0.2)
A 		43.1
(3)
A 		28.1
(0.7)
A 		37.2
(2.1)
A 		3.9
(-3)
A 		17
(-1)
A 		39
avr 16.3
(-3) 		30.4
(0.7) 		24.2
(-0.9) 		23.5
(-1.1) 		25
(-0.7) 		39
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.1
(-0.9)
A 		2.5
(-3)
A 		6.1
(-1.6)
A 		18.3
(3)
P 		16
B 13.2
(3)
A 		0.8
(-2.7)
A 		0.2
(-3)
A 		7.6
(0.4)
A 		13
C 1.4
(-3)
A 		4.8
(-1.6)
A 		2.2
(-2.7)
A 		15.6
(3)
A 		14
avr 7.6
(-0.4) 		2.7
(-3) 		2.8
(-2.9) 		13.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1
(-3)
A 		13.5
(1.6)
A 		3.5
(-2.1)
A 		6.9
(-0.8)
A 		17.4
(3)
A 		9.3
(0)
A 		16
B 7.4
(-1.4)
A 		3.4
(-2.5)
A 		6.9
(-1.5)
A 		1.6
(-3)
A 		5.4
(-1.9)
A 		23
(3)
A 		21
C 8.3
(0.5)
A 		13.2
(3)
A 		7.1
(-0.1)
A 		7.5
(0.1)
A 		1.3
(-3)
A 		5.7
(-0.8)
A 		12
avr 5.6
(-2.8) 		10
(0.8) 		5.8
(-2.6) 		5.3
(-3) 		8
(-0.8) 		12.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15908
Sequence Type Exemplar sequence
Representative Public ID F41F3.1 NCBI
Target Description F41F3.1 /REP_DB=WormBase Gene ID /WP=CE07215 /TR=Q20283 /GB=AAA97983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071852 NCBI Caenorhabditis elegans F41F3.1 (F41F3.1) mRNA, complete cds. 11/11 None
F41F3.1 ENSEMBL cdna:known chromosome:CEL140:V:4654404:4655600:1 gene:F41F3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023064 6/11 Cross Hyb Matching Probes None
SNAP00000023065 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023074 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4654403-4655600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41F3.1
Entrez Gene 185626 Entrez gene
SwissProt Q20283 EMBL-EBI
WormBase CE07215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97983 Hypothetical protein F41F3.1 [Caenorhabditis elegans] ref|NP_504253.1| F41F3.1 [Caenorhabditis elegans] 2.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504253.1 2 59-81,177-199
F41F3.1 2 59-81,177-199
Sequence
Target Sequence 
>C. ELEGANS:182458_AT
tgcaggctgaccatgaaaactttagcagatctaacaaatttggatcttcgagtgaagaca
tttcatctgatacaatgctttacataattctcatacctatcggtgcctgtattcttattg
gaatcatttccttgtgcattgtatttgggtgtcgaatttatcatcggagaagatacatga
gagcttataatggtgctggagcaggatattacaacaatccaaatgatgccaaggtacaag
acaataatactggagcacctgtgcagaatcaggaagacatggagaatcaaaagaatatgg
cgctggagcagcagcaaaatgctgaaaataaaagtgttaacgggaaagatgatgaggttc
cagttcaacaaaactttggtagatcaagcaactctggattttcaagcaataccagtgaag
acatttcatctaatatgctttacataattctcattcctattggtgcatgtgttcttattg
gaattattgccttgtgcattgtatttgggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGGCTGACCATGAAAACTTTAG 655 575 104 Antisense
ACATAATTCTCATACCTATCGGTGC 538 105 185 Antisense
ACCTATCGGTGCCTGTATTCTTATT 467 87 198 Antisense
GGAATCATTTCCTTGTGCATTGTAT 348 533 223 Antisense
AATAATACTGGAGCACCTGTGCAGA 663 171 346 Antisense
GAATATGGCGCTGGAGCAGCAGCAA 59 327 396 Antisense
GATGATGAGGTTCCAGTTCAACAAA 642 409 451 Antisense
CAAGCAACTCTGGATTTTCAAGCAA 577 185 488 Antisense
ATAATTCTCATTCCTATTGGTGCAT 190 27 547 Antisense
ATTGGTGCATGTGTTCTTATTGGAA 280 3 562 Antisense
TTGCCTTGTGCATTGTATTTGGGTG 104 703 590 Antisense
Sequence Source Affymetrix Proprietary Database