[Home] | [Total List]

[182457_at]

Description T07E3.6 /REP_DB=WormBase Gene ID /WP=CE01387 /TR=Q22314 /GB=AAA21084.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 10      6grp_total > 08      4grp_total > 23      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2159
1 2 3 4 range
A 2362.8
(3)
P 		457.3
(-3)
P 		441.4
(-3)
P 		1523.4
(0.4)
P 		1921
B 2003.4
(2.7)
P 		756.4
(-1.8)
P 		425.7
(-3)
P 		2091.9
(3)
P 		1666
C 2584.8
(3)
P 		979.5
(-1.7)
P 		516.3
(-3)
P 		2163.5
(1.8)
P 		2069
avr 2317
(3) 		731.1
(-2.1) 		461.1
(-3) 		1926.3
(1.7) 		1856

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2441
1 2 3 4 5 6 range
A 1181.6
(-1.4)
P 		1714.2
(2.3)
P 		1126.4
(-1.8)
P 		1808.6
(3)
P 		958.6
(-3)
P 		1368.5
(-0.1)
P 		850
B 1725.3
(3)
P 		1200.9
(-0.7)
P 		1054.5
(-1.7)
P 		976.6
(-2.2)
P 		1172.4
(-0.9)
P 		866.8
(-3)
P 		859
C 3308.1
(3)
P 		1071.1
(-2.6)
P 		1666.7
(-1.1)
P 		1005.7
(-2.7)
P 		1615.3
(-1.2)
P 		892.5
(-3)
P 		2416
avr 2071.7
(3) 		1328.7
(-1.3) 		1282.5
(-1.6) 		1263.6
(-1.7) 		1248.8
(-1.8) 		1042.6
(-3) 		1029
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 762
1 2 3 4 range
A 860.3
(3)
P 		99.3
(-3)
P 		115.4
(-2.9)
P 		223
(-2)
P 		761
B 638.9
(3)
P 		186.8
(-2)
P 		98.7
(-3)
P 		445.8
(0.9)
P 		540
C 855.7
(3)
P 		281.6
(-2.1)
P 		179.9
(-3)
P 		364.8
(-1.4)
P 		676
avr 785
(3) 		189.2
(-2.5) 		131.3
(-3) 		344.5
(-1) 		654

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1024
1 2 3 4 5 6 range
A 217.8
(-3)
P 		609.7
(3)
P 		245.3
(-2.6)
P 		458.7
(0.7)
P 		289.3
(-1.9)
P 		333.2
(-1.2)
P 		392
B 600.3
(3)
P 		399.7
(-0.5)
P 		256.1
(-3)
P 		258.7
(-3)
P 		476.3
(0.8)
P 		323.2
(-1.8)
P 		344
C 1226.2
(3)
P 		326.8
(-2.3)
P 		424.2
(-1.7)
P 		202.3
(-3)
P 		522.7
(-1.1)
P 		298.8
(-2.4)
P 		1024
avr 681.4
(3) 		445.4
(-0.8) 		308.5
(-3) 		306.6
(-3) 		429.4
(-1) 		318.4
(-2.8) 		375
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6792
Sequence Type Exemplar sequence
Representative Public ID T07E3.6 NCBI
Target Description T07E3.6 /REP_DB=WormBase Gene ID /WP=CE01387 /TR=Q22314 /GB=AAA21084.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171878(11), NM_171177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171878 NCBI Caenorhabditis elegans T07E3.6a (T07E3.6) mRNA, complete cds. 11/11 None
NM_171177 NCBI Caenorhabditis elegans T07E3.6b (T07E3.6) mRNA, complete cds. 11/11 None
T07E3.6a ENSEMBL cdna:known chromosome:CEL140:III:6909370:6912413:-1 gene:T07E3.6 11/11 None
T07E3.6b ENSEMBL cdna:known chromosome:CEL140:III:6909541:6912413:-1 gene:T07E3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020885 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020888 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6909767-6912412(-) 100.0 100.0
Public Domain and Genome References
Ensembl T07E3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL56619 Hypothetical protein T07E3.6a [Caenorhabditis elegans] ref|NP_741206.1| T07E3.6a [Caenorhabditis elegans] 7.0E-99
blast AAL56620 Hypothetical protein T07E3.6b [Caenorhabditis elegans] ref|NP_741205.1| T07E3.6b [Caenorhabditis elegans] 2.0E-97
blast AAL56620 Hypothetical protein T07E3.6b [Caenorhabditis elegans] ref|NP_741205.1| T07E3.6b [Caenorhabditis elegans] 5.0E-96
blast AAL56619 Hypothetical protein T07E3.6a [Caenorhabditis elegans] ref|NP_741206.1| T07E3.6a [Caenorhabditis elegans] 5.0E-96
blast D88492 protein T07E3.6 [imported] - Caenorhabditis elegans 4.0E-86
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741206.1 2 5-27,98-120
NP_741205.1 2 5-27,98-120
T07E3.6a 2 5-27,98-120
T07E3.6b 2 5-27,98-120
Sequence
Target Sequence 
>C. ELEGANS:182457_AT
atttccgtcatattttcacctcgggttccggggcgttttaaaagtgggcgtgttgctccc
tcttggtgcgcgggtcgaagagaggcggagtctaaaactagagagatctgtctctctctc
ggttgtgctcattcattctattcgacttgtgcctcacagccaagtgaacaagcttttcca
gctcttcctcttccttcttcactcaacgtcaacatgaacagattcatcatttcaatgatt
gcccttttggctgtcttctgtgctgtatctacagcttcacctcttttatacagagctcca
cagtatcagatgtacgatgatgttcagttcgtaaaacgcagcaacgccgagcttatcaac
ggactcatcggaatggatttgggaaaattgtcagctgtcggaaaacgaaacatttatggt
cctcgttttgattatcgattggttttattgcgctcatctgctctgacatgcgattctgtt
ctgctcatcgtcatcttcttcatcttttccttctcaaaaaccttctccaatcagttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCGTCATATTTTCACCTCGGG 206 17 82 Antisense
TAAAAGTGGGCGTGTTGCTCCCTCT 532 627 120 Antisense
GTTGTGCTCATTCATTCTATTCGAC 410 437 203 Antisense
GTGAACAAGCTTTTCCAGCTCTTCC 304 481 245 Antisense
CCTTCTTCACTCAACGTCAACATGA 625 269 274 Antisense
AATGATTGCCCTTTTGGCTGTCTTC 222 165 315 Antisense
TACAGCTTCACCTCTTTTATACAGA 301 643 351 Antisense
AACGCCGAGCTTATCAACGGACTCA 706 143 424 Antisense
ATTGGTTTTATTGCGCTCATCTGCT 121 5 519 Antisense
TGACATGCGATTCTGTTCTGCTCAT 491 571 545 Antisense
CAAAAACCTTCTCCAATCAGTTCCT 202 191 596 Antisense
Sequence Source Affymetrix Proprietary Database