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[182456_at]

Description F08E10.3 /REP_DB=WormBase Gene ID /WP=CE18573 /TR=Q9XXP5 /GB=CAA16499.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 03      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 8
(-2.9)
A 		17.6
(-2.2)
A 		6
(-3)
A 		89.3
(3)
A 		83
B 25.6
(-0.9)
A 		7.8
(-3)
A 		21.9
(-1.4)
A 		59.2
(3)
A 		51
C 31.6
(-1.4)
A 		17.4
(-2.5)
A 		10.7
(-3)
A 		90.5
(3)
A 		80
avr 21.7
(-2.2) 		14.3
(-2.9) 		12.9
(-3) 		79.7
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 11.9
(-2.5)
A 		7.9
(-3)
A 		55.5
(3)
A 		8.1
(-2.9)
A 		16.7
(-1.9)
A 		7.6
(-3)
A 		48
B 46.8
(3)
A 		34.9
(1.2)
A 		6.7
(-3)
A 		19.7
(-1.1)
A 		13.6
(-2)
A 		25.2
(-0.2)
A 		40
C 6.7
(-2.5)
A 		35.3
(0.8)
A 		13.3
(-1.8)
A 		54.2
(3)
A 		2.8
(-3)
A 		12
(-1.9)
A 		51
avr 21.8
(1) 		26
(2.5) 		25.2
(2.2) 		27.3
(3) 		11
(-3) 		14.9
(-1.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.9
(-2.3)
A 		3.8
(-1.9)
A 		1.6
(-3)
A 		13.1
(3)
A 		12
B 8.2
(0.5)
A 		1.9
(-3)
A 		5.1
(-1.2)
A 		12.6
(3)
A 		11
C 10.5
(0.5)
A 		5
(-2.3)
A 		3.7
(-3)
A 		15.3
(3)
A 		12
avr 7.2
(-0.8) 		3.6
(-2.9) 		3.5
(-3) 		13.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.2
(-2.8)
A 		2.8
(-2.5)
A 		12.1
(3)
A 		2.1
(-2.9)
A 		5
(-1.2)
A 		1.9
(-3)
A 		10
B 16.3
(3)
A 		11.6
(1.1)
A 		1.6
(-3)
A 		5.2
(-1.5)
A 		5.5
(-1.4)
A 		9.4
(0.2)
A 		15
C 2.5
(-2)
A 		10.8
(2.9)
A 		3.4
(-1.5)
A 		10.9
(3)
A 		0.9
(-3)
A 		4
(-1.1)
A 		10
avr 7
(1.2) 		8.4
(3) 		5.7
(-0.5) 		6.1
(-0) 		3.8
(-3) 		5.1
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14393
Sequence Type Exemplar sequence
Representative Public ID F08E10.3 NCBI
Target Description F08E10.3 /REP_DB=WormBase Gene ID /WP=CE18573 /TR=Q9XXP5 /GB=CAA16499.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075023 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-123) (srh-123) mRNA, complete cds. 11/11 None
SNAP00000039051 ENSEMBL cdna:SNAP chromosome:CEL140:V:17477411:17480684:1 9/11 None
GENEFINDER00000039058 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17476848:17478047:1 11/11 None
F08E10.3 ENSEMBL cdna:known chromosome:CEL140:V:17476575:17478047:1 gene:F08E10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y68A4A.8 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17476574-17478047(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-123
Ensembl F08E10.3
Entrez Gene 184184 Entrez gene
SwissProt Q9XXP5 EMBL-EBI
WormBase CE18573 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16499 Hypothetical protein F08E10.3 [Caenorhabditis elegans] ref|NP_507424.1| Serpentine Receptor, class H family member (srh-123) [Caenorhabditis elegans] 0.0
blast CAA16499 Hypothetical protein F08E10.3 [Caenorhabditis elegans] ref|NP_507424.1| Serpentine Receptor, class H family member (srh-123) [Caenorhabditis elegans] 1.0E-145
blast CAB04631 Hypothetical protein R08H2.5 [Caenorhabditis elegans] ref|NP_506818.2| Serpentine Receptor, class H family member (srh-122) [Caenorhabditis elegans] 1.0E-140
blast CAA20962 Hypothetical protein Y102A5C.21 [Caenorhabditis elegans] ref|NP_507292.2| Serpentine Receptor, class H family member (srh-119) [Caenorhabditis elegans] 1.0E-115
blast CAB04631 Hypothetical protein R08H2.5 [Caenorhabditis elegans] ref|NP_506818.2| Serpentine Receptor, class H family member (srh-122) [Caenorhabditis elegans] 1.0E-101
blast CAA16499 Hypothetical protein F08E10.3 [Caenorhabditis elegans] ref|NP_507424.1| Serpentine Receptor, class H family member (srh-123) [Caenorhabditis elegans] 8.0E-94
blast CAA16502 Hypothetical protein F08E10.2 [Caenorhabditis elegans] ref|NP_507425.1| Serpentine Receptor, class BC (class B-like) family member (srbc-61) [Caenorhabditis elegans] 5.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.3E-78
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.9E-52
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.4E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507424.1 7 31-53,66-88,108-130,151-168,217-239,259-281,291-313
F08E10.3 7 31-53,66-88,108-130,151-168,217-239,259-281,291-313
SNAP00000039051 7 60-82,102-124,134-156,163-183,198-220,244-266,294-313
GENEFINDER00000039058 5 20-39,60-77,126-148,168-190,200-222
Sequence
Target Sequence 
>C. ELEGANS:182456_AT
ctattattgcgcggtaatgctcccagctgtgtttctgacccctctgctcaagtttttccc
tgaagatcaagacgttgctaaactagaagcattgaagatttatccctgcccaactcagga
atttttcacgacttcagtgttcatcgccttgattgatcaagttgcaattcgatatgctat
cattccattagcattggcagtgagcagcgtactgggtcattttctatttcatatggtttg
cctggtgtattatatttatgtagtgccatctaaattcgtttccaaggagacacagggaaa
acagaaaacttttctaatcagcattttgtttcaaacctccatcccctttgccgtagtgat
cataccacttgctattgttttcgccttcaattcattcggctactattctcagaaagcaat
gaacttggctttttgctgcgcactacttcatggtctgtgcgaaagtgttggcgtgattgt
tgtgcacaaaccatatcgagacgtgattggtttaaagatcggaagattgttgttcaaaag
gtcagaaatttccattcacgttcagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTATTGCGCGGTAATGCTCCCA 706 221 468 Antisense
ATTGAAGATTTATCCCTGCCCAACT 392 3 558 Antisense
TTCACGACTTCAGTGTTCATCGCCT 337 685 592 Antisense
AGCAGCGTACTGGGTCATTTTCTAT 486 77 670 Antisense
GTGCCATCTAAATTCGTTTCCAAGG 103 479 730 Antisense
CCCCTTTGCCGTAGTGATCATACCA 623 261 810 Antisense
TACCACTTGCTATTGTTTTCGCCTT 102 651 830 Antisense
AATTCATTCGGCTACTATTCTCAGA 171 177 856 Antisense
AATGAACTTGGCTTTTTGCTGCGCA 536 165 885 Antisense
CTGCGCACTACTTCATGGTCTGTGC 183 237 903 Antisense
AGAAATTTCCATTCACGTTCAGCCA 246 73 1011 Antisense
Sequence Source Affymetrix Proprietary Database