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[182455_at]

Description F39G3.6 /REP_DB=WormBase Gene ID /WP=CE10122 /TR=O16269 /GB=AAB65331.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 1.2
(-3)
A 		19.3
(-1)
A 		55.7
(3)
A 		6.8
(-2.4)
A 		55
B 1.5
(-3)
A 		52.3
(3)
A 		1.2
(-3)
A 		15.7
(-1.3)
A 		51
C 3
(-3)
A 		35.4
(1.3)
A 		37.3
(1.6)
P 		47.8
(3)
P 		45
avr 1.9
(-3) 		35.7
(3) 		31.4
(2.2) 		23.4
(0.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 51.3
(-2.8)
A 		30.1
(-3)
A 		90.4
(-2.4)
P 		623.2
(3)
P 		350.5
(0.2)
P 		38.9
(-2.9)
A 		593
B 26.6
(-3)
A 		50.2
(-2.7)
A 		113.2
(-2)
P 		539.3
(3)
P 		378.6
(1.1)
P 		55
(-2.7)
P 		513
C 21
(-3)
A 		52.2
(-2.7)
P 		92
(-2.3)
P 		600.9
(3)
P 		352
(0.4)
P 		60.3
(-2.6)
P 		580
avr 33
(-3) 		44.2
(-2.9) 		98.5
(-2.3) 		587.8
(3) 		360.4
(0.5) 		51.4
(-2.8) 		555
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.4
(-3)
A 		4.2
(-1.4)
A 		14.6
(3)
A 		1
(-2.7)
A 		14
B 0.5
(-2.9)
A 		12.9
(3)
A 		0.3
(-3)
A 		3.3
(-1.6)
A 		13
C 1
(-3)
A 		10.2
(1.6)
A 		13
(3)
P 		8.1
(0.6)
P 		12
avr 0.6
(-3) 		9.1
(2.9) 		9.3
(3) 		4.1
(-0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 9.5
(-3)
A 		10.7
(-3)
A 		19.7
(-2.6)
P 		158.1
(3)
P 		105.8
(0.9)
P 		9.5
(-3)
A 		149
B 9.3
(-3)
A 		16.7
(-2.7)
A 		27.5
(-2.2)
P 		142.8
(2.5)
P 		153.8
(3)
P 		20.5
(-2.5)
P 		145
C 7.8
(-3)
A 		15.9
(-2.6)
P 		23.4
(-2.2)
P 		120.8
(3)
P 		113.9
(2.6)
P 		20.2
(-2.3)
P 		113
avr 8.9
(-3) 		14.4
(-2.7) 		23.5
(-2.3) 		140.6
(3) 		124.5
(2.3) 		16.7
(-2.6) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15257
Sequence Type Exemplar sequence
Representative Public ID F39G3.6 NCBI
Target Description F39G3.6 /REP_DB=WormBase Gene ID /WP=CE10122 /TR=O16269 /GB=AAB65331.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071866(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071866 NCBI Caenorhabditis elegans F39G3.6 (F39G3.6) mRNA, complete cds. 9/11 None
SNAP00000029877 ENSEMBL cdna:SNAP chromosome:CEL140:V:4710742:4714725:1 11/11 None
GENEFINDER00000029890 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4710742:4714305:1 11/11 None
F39G3.6 ENSEMBL cdna:known chromosome:CEL140:V:4710742:4714305:1 gene:F39G3.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4710741-4714305(+) 96.3 100.0
Public Domain and Genome References
Gene Title
Ensembl F39G3.6
Entrez Gene 185503 Entrez gene
SwissProt O16269 EMBL-EBI
WormBase CE32186 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65331 Hypothetical protein F39G3.6 [Caenorhabditis elegans] ref|NP_504267.2| F39G3.6 [Caenorhabditis elegans] 0.0
blast CAE72076 Hypothetical protein CBG19162 [Caenorhabditis briggsae] 0.0
blast CAB60446 Hypothetical protein Y67A10A.1 [Caenorhabditis elegans] ref|NP_502742.1| Y67A10A.1 [Caenorhabditis elegans] 0.0
blast CAE72076 Hypothetical protein CBG19162 [Caenorhabditis briggsae] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.6E-14
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.3E-101
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504267.2 6 10-32,82-101,147-169,182-204,363-385,397-419
F39G3.6 6 10-32,82-101,147-169,182-204,363-385,397-419
SNAP00000029877 8 10-32,39-58,104-126,139-161,233-250,263-285,289-311,318-340
GENEFINDER00000029890 8 10-32,82-101,147-169,182-204,276-293,306-328,332-354,361-383
Sequence
Target Sequence 
>C. ELEGANS:182455_AT
gaacatatacgggcacattttaactataactactcggactacagatatattgccataagt
ggtaagtgcaaaacttttggaaaatttggcaatttacgaaaacttggactaaaaatttcc
aaatttttgagaattttattatggtatttggtcaagttagattattattccttaaaaata
cttgaaatttatcagaaaaaaaaaggctacgcattgtacacagattctgctctttcaagc
ggagctcttgaaattactaggcaacaagttgaaaaatacaaaccagacgttcttcttatt
gttgctcgattctcagctgctttcaagacaaaatatgaagaaaatgatggatatttgcag
caaatcaatgagaatatcgcattctatgagaagttcgtgaaaaccgtatacatattggat
gctcatccaatgtacccactaggattccttaatttgtatctccattacttgattcaaaaa
cctgacgagctggagcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATATACGGGCACATTTTAACT 510 351 1501 Antisense
ACTCGGACTACAGATATATTGCCAT 53 99 1532 Antisense
GGCTACGCATTGTACACAGATTCTG 1 539 1705 Antisense
GATTCTGCTCTTTCAAGCGGAGCTC 156 433 1723 Antisense
AGACGTTCTTCTTATTGTTGCTCGA 191 71 1785 Antisense
TATTGTTGCTCGATTCTCAGCTGCT 541 665 1797 Antisense
GATTCTCAGCTGCTTTCAAGACAAA 634 431 1808 Antisense
TGGATGCTCATCCAATGTACCCACT 197 551 1916 Antisense
CAATGTACCCACTAGGATTCCTTAA 340 183 1928 Antisense
GGATTCCTTAATTTGTATCTCCATT 274 509 1942 Antisense
AAAAACCTGACGAGCTGGAGCATTT 482 127 1976 Antisense
Sequence Source Affymetrix Proprietary Database