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[182454_at]

Description D2030.10 /REP_DB=WormBase Gene ID /WP=CE09087 /TR=P90796 /GB=CAA98133.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      4grp_high_8_8 > 56      6grp_total > 40      4grp_total > 63      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 119
(3)
P 		65
(-3)
M 		107.7
(1.8)
P 		64.7
(-3)
A 		54
B 136.7
(3)
P 		70.1
(-3)
P 		90.6
(-1.2)
P 		93.2
(-0.9)
P 		67
C 160.3
(3)
P 		62.8
(-2.9)
A 		113.4
(0.1)
P 		61.6
(-3)
P 		99
avr 138.7
(3) 		66
(-3) 		103.9
(0.1) 		73.2
(-2.4) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 90.8
(-0.6)
P 		102.3
(-0.1)
P 		104
(0)
P 		165
(3)
P 		43
(-3)
A 		80.7
(-1.1)
A 		122
B 120
(-0.4)
P 		115
(-1)
P 		145.2
(3)
P 		120.2
(-0.3)
P 		100.3
(-3)
P 		113.2
(-1.3)
P 		45
C 80.5
(-1)
P 		166.9
(2.8)
P 		170.4
(3)
P 		80.3
(-1)
P 		35.5
(-3)
A 		63.6
(-1.8)
A 		135
avr 97.1
(-0.2) 		128.1
(2.1) 		139.9
(3) 		121.8
(1.6) 		59.6
(-3) 		85.8
(-1) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 43.3
(3)
P 		14.1
(-2.2)
M 		28.2
(0.3)
P 		9.5
(-3)
A 		34
B 43.6
(3)
P 		17.3
(-3)
P 		21
(-2.2)
P 		19.9
(-2.4)
P 		26
C 53.1
(3)
P 		18
(-1.9)
A 		39.5
(1.1)
P 		10.4
(-3)
P 		43
avr 46.7
(3) 		16.5
(-2.4) 		29.6
(-0.1) 		13.3
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.7
(-2.2)
P 		36.4
(1.9)
P 		22.6
(-1)
P 		41.8
(3)
P 		13
(-3)
A 		19.6
(-1.6)
A 		29
B 41.8
(2.8)
P 		38.3
(0.7)
P 		35.3
(-1)
P 		31.8
(-3)
P 		40.7
(2.1)
P 		42.2
(3)
P 		10
C 29.8
(-0.2)
P 		50.9
(3)
P 		43.4
(1.9)
P 		16.2
(-2.3)
P 		11.5
(-3)
A 		21.3
(-1.5)
A 		39
avr 29.4
(-0.7) 		41.9
(3) 		33.8
(0.6) 		29.9
(-0.6) 		21.7
(-3) 		27.7
(-1.2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1063
Sequence Type Exemplar sequence
Representative Public ID D2030.10 NCBI
Target Description D2030.10 /REP_DB=WormBase Gene ID /WP=CE09087 /TR=P90796 /GB=CAA98133.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170901(10), NM_001025903(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170901 NCBI Caenorhabditis elegans Aboc, EXpulsion defective family member (aex-1) (aex-1) mRNA, complete cds. 10/11 None
NM_001025903 NCBI Caenorhabditis elegans Aboc, EXpulsion defective family member (aex-1) (aex-1) mRNA, complete cds. 10/11 None
D2030.10a ENSEMBL cdna:known chromosome:CEL140:I:7610438:7616313:1 gene:D2030.10 10/11 None
D2030.10b ENSEMBL cdna:known chromosome:CEL140:I:7610451:7616372:1 gene:D2030.10 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031287 5/11 Cross Hyb Matching Probes None
SNAP00000031281 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7610381-7616064(+) 98.52 100.0
Public Domain and Genome References
Ensembl D2030.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98133 Hypothetical protein D2030.10a [Caenorhabditis elegans] emb|CAA98125.2| Hypothetical protein D2030.10a [Caenorhabditis elegans] emb|CAA98122.2| Hypothetical protein D2030.10a [Caenorhabditis elegans] ref|NP_740891.1| Aboc, EXpulsion defective family member (aex-1) [Caenorhabditis elegans] gb|AAL82897.1| AEX-1 [Caenorhabditis elegans] 0.0
blast T20361 hypothetical protein D2030.10 - Caenorhabditis elegans 0.0
blast CAD36493 Hypothetical protein D2030.10b [Caenorhabditis elegans] emb|CAD36486.1| Hypothetical protein D2030.10b [Caenorhabditis elegans] ref|NP_001021074.1| Aboc, EXpulsion defective family member (aex-1) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182454_AT
aactcgttttgggaatgctccacatgttgatgtacatatttcatatgttaagatggttga
tgaggatactatttcaattcagattaaattgataaaaatgtctccaatcgaatggatcga
tgtaatatctgatcgtgttgattattttgttcgactggaactctttccaaagattttatt
cccttcgaataaatttgaatcaccaacaacaaatccaatgccacaatcaacacgtcccca
atggaaacagctttttgaaatacagttttacggactatttttagaacttcccaaaaatag
ttcagtcgaacatttttcaaaattctatatggaagtgtcttttcctcaggcttctgaaga
aaaaccaacacaaagactacaagttccactgttgccaaatgatttttccgatcaaaataa
tgtgttttatcagcttctaaaaacccgggcatgtcgtgactcgattgcgaaggagtttat
tgaaactcgtactcgacgtcatcaacgaatccgtgccctgcaacattatattcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCGTTTTGGGAATGCTCCACAT 506 141 2484 Antisense
TTTTGTTCGACTGGAACTCTTTCCA 660 675 2628 Antisense
TCCAAAGATTTTATTCCCTTCGAAT 111 587 2649 Antisense
AATCCAATGCCACAATCAACACGTC 571 165 2695 Antisense
AACACGTCCCCAATGGAAACAGCTT 397 135 2712 Antisense
ATGGAAGTGTCTTTTCCTCAGGCTT 312 53 2812 Antisense
GACTACAAGTTCCACTGTTGCCAAA 426 373 2858 Antisense
TTATCAGCTTCTAAAAACCCGGGCA 261 659 2910 Antisense
GGCATGTCGTGACTCGATTGCGAAG 328 537 2931 Antisense
GAAACTCGTACTCGACGTCATCAAC 415 357 2965 Antisense
CGTGCCCTGCAACATTATATTCGGA 564 245 2995 Antisense
Sequence Source Affymetrix Proprietary Database