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[182453_at]

Description ZC190.2 /REP_DB=WormBase Gene ID /WP=CE18426 /TR=O76702 /GB=AAC26961.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 64.1
(-1.3)
A 		41.4
(-2.3)
A 		27.1
(-3)
A 		154.9
(3)
P 		128
B 51.7
(-1.7)
A 		31.9
(-3)
A 		32.3
(-3)
A 		120.4
(3)
P 		89
C 80.2
(-1.1)
A 		49
(-2)
A 		13.7
(-3)
A 		218.4
(3)
P 		205
avr 65.3
(-1.2) 		40.8
(-2.3) 		24.4
(-3) 		164.6
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 41.9
(-1.1)
A 		38.8
(-1.4)
A 		81.4
(3)
A 		23.5
(-3)
A 		45.2
(-0.8)
A 		55.8
(0.3)
A 		58
B 52.4
(2.1)
A 		59.4
(3)
A 		21.4
(-1.8)
A 		12.1
(-3)
A 		34.1
(-0.2)
A 		38.2
(0.3)
A 		47
C 6.7
(-2.8)
A 		60.6
(3)
M 		10.8
(-2.4)
A 		5.3
(-3)
A 		47.2
(1.5)
A 		56
(2.5)
A 		55
avr 33.7
(0.1) 		52.9
(3) 		37.9
(0.7) 		13.6
(-3) 		42.2
(1.4) 		50
(2.6) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 23.3
(3)
A 		9
(-2.3)
A 		7.1
(-3)
A 		22.7
(2.8)
P 		16
B 16.5
(-0)
A 		7.9
(-2.9)
A 		7.5
(-3)
A 		25.7
(3)
P 		18
C 26.6
(1.1)
A 		14.1
(-1.3)
A 		4.8
(-3)
A 		36.8
(3)
P 		32
avr 22.1
(1.3) 		10.3
(-2) 		6.5
(-3) 		28.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.7
(-2.1)
A 		13.8
(1)
A 		17.7
(3)
A 		5.9
(-3)
A 		13.6
(0.9)
A 		13.6
(0.9)
A 		12
B 18.2
(2.4)
A 		19.8
(3)
A 		5.2
(-2.3)
A 		3.2
(-3)
A 		13.9
(0.9)
A 		14.2
(1)
A 		17
C 2.5
(-2.5)
A 		18.5
(2.9)
M 		2.7
(-2.5)
A 		1.1
(-3)
A 		15.3
(1.8)
A 		18.7
(3)
A 		18
avr 9.5
(-0.4) 		17.4
(3) 		8.5
(-0.8) 		3.4
(-3) 		14.3
(1.7) 		15.5
(2.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12461
Sequence Type Exemplar sequence
Representative Public ID ZC190.2 NCBI
Target Description ZC190.2 /REP_DB=WormBase Gene ID /WP=CE18426 /TR=O76702 /GB=AAC26961.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072835 NCBI Caenorhabditis elegans ZC190.2 (ZC190.2) mRNA, complete cds. 11/11 None
SNAP00000000633 ENSEMBL cdna:SNAP chromosome:CEL140:V:8684148:8685350:1 11/11 None
GENEFINDER00000000647 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8683938:8685350:1 11/11 None
ZC190.2 ENSEMBL cdna:known chromosome:CEL140:V:8683938:8685350:1 gene:ZC190.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8683938-8685351(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.2
Entrez Gene 191094 Entrez gene
SwissProt O76702 EMBL-EBI
WormBase CE18426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26961 Hypothetical protein ZC190.2 [Caenorhabditis elegans] ref|NP_505236.1| ZC190.2 [Caenorhabditis elegans] 1.0E-180
blast AAC26961 Hypothetical protein ZC190.2 [Caenorhabditis elegans] ref|NP_505236.1| ZC190.2 [Caenorhabditis elegans] 1.0E-145
blast CAE58336 Hypothetical protein CBG01450 [Caenorhabditis briggsae] 1.0E-72
blast CAE58336 Hypothetical protein CBG01450 [Caenorhabditis briggsae] 2.0E-53
blast CAE75213 Hypothetical protein CBG23162 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505236.1 7 22-44,57-79,99-116,136-158,168-190,214-236,251-273
ZC190.2 7 22-44,57-79,99-116,136-158,168-190,214-236,251-273
SNAP00000000633 5 4-26,82-104,114-136,160-182,197-219
GENEFINDER00000000647 7 22-44,57-79,99-116,136-158,168-190,214-236,251-273
Sequence
Target Sequence 
>C. ELEGANS:182453_AT
tcttctccgcagtgttcattgttggatgtattattggaatgctttcagcgtttctctata
tttatttagttagaatttcatacgacagtactttgtttgccatcggatttggtagtctga
caatgatggagattttaaacggatgtatcgtattttccttgttttacacagcaaaagaaa
tatatcaaaaccaaagatcagcaccactgcatgtccgatatgaactattccagtcatatg
cgtactgccgttgtgctgcagcaagttttactgcacgagtctttatcattgcctacgtct
acctgaagctagcgggatttttcggcggagacatggactctggctttttttacatgatga
atttgttcataaatctctactgcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCCGCAGTGTTCATTGTTGG 96 617 416 Antisense
ACAGTACTTTGTTTGCCATCGGATT 668 107 500 Antisense
GATGTATCGTATTTTCCTTGTTTTA 91 409 557 Antisense
GCACCACTGCATGTCCGATATGAAC 524 313 616 Antisense
ATTCCAGTCATATGCGTACTGCCGT 296 7 642 Antisense
GTACTGCCGTTGTGCTGCAGCAAGT 280 459 657 Antisense
GCACGAGTCTTTATCATTGCCTACG 212 315 688 Antisense
CCTACGTCTACCTGAAGCTAGCGGG 275 649 707 Antisense
GCTAGCGGGATTTTTCGGCGGAGAC 517 301 723 Antisense
GACATGGACTCTGGCTTTTTTTACA 519 369 745 Antisense
TTTGTTCATAAATCTCTACTGCCTC 475 665 777 Antisense
Sequence Source Affymetrix Proprietary Database