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[182451_at]

Description K04G11.3 /REP_DB=WormBase Gene ID /WP=CE11746 /TR=Q93845 /GB=CAB01758.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      4grp_high_8_8 > 21      6grp_total > 63      4grp_total > 02      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 27.2
(-3)
P 		30.4
(-2.8)
A 		28.2
(-2.9)
P 		137.7
(3)
P 		111
B 46.7
(-1)
P 		28.8
(-3)
A 		34.8
(-2.3)
P 		82.1
(3)
P 		53
C 43.7
(-3)
P 		55.1
(-1.5)
P 		49.8
(-2.2)
P 		88.5
(3)
P 		45
avr 39.2
(-2.9) 		38.1
(-3) 		37.6
(-3) 		102.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 6.8
(-3)
A 		25.7
(-1.6)
P 		89.8
(3)
P 		65.1
(1.2)
P 		39.4
(-0.6)
P 		53.7
(0.4)
P 		83
B 33.5
(-3)
P 		48.6
(-1.2)
P 		83.7
(3)
P 		58.6
(0)
P 		58.7
(0)
P 		59
(0)
P 		50
C 53
(-0.1)
P 		64.3
(2.5)
P 		66.3
(3)
P 		56
(0.6)
P 		40.6
(-3)
P 		43.4
(-2.3)
P 		26
avr 31.1
(-3) 		46.2
(-1.1) 		79.9
(3) 		59.9
(0.5) 		46.2
(-1.1) 		52
(-0.4) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.9
(-1.5)
P 		6.6
(-3)
A 		7.4
(-2.6)
P 		20.2
(3)
P 		14
B 14.9
(1.5)
P 		7.1
(-3)
A 		8.1
(-2.4)
P 		17.5
(3)
P 		10
C 14.5
(-3)
P 		15.9
(0)
P 		17.3
(3)
P 		14.9
(-2.1)
P 		3
avr 13.1
(-0.5) 		9.9
(-3) 		10.9
(-2.2) 		17.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.3
(-3)
A 		9.2
(-0.4)
P 		19.6
(3)
P 		16.5
(2)
P 		11.9
(0.5)
P 		13.1
(0.9)
P 		18
B 11.6
(-3)
P 		16.2
(-0.7)
P 		20.3
(1.3)
P 		15.5
(-1.1)
P 		23.8
(3)
P 		22
(2.1)
P 		12
C 19.6
(3)
P 		19.6
(3)
P 		16.9
(1)
P 		11.3
(-3)
P 		13.1
(-1.7)
P 		14.5
(-0.7)
P 		8
avr 10.8
(-3) 		15
(0.1) 		18.9
(3) 		14.4
(-0.3) 		16.3
(1.1) 		16.5
(1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17456
Sequence Type Exemplar sequence
Representative Public ID K04G11.3 NCBI
Target Description K04G11.3 /REP_DB=WormBase Gene ID /WP=CE11746 /TR=Q93845 /GB=CAB01758.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077992 NCBI Caenorhabditis elegans K04G11.3 (K04G11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000024619 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14345290:14347493:-1 11/11 None
K04G11.3 ENSEMBL cdna:known chromosome:CEL140:X:14345290:14347493:-1 gene:K04G11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024614 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14345289-14347493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G11.3
Entrez Gene 187011 Entrez gene
SwissProt Q93845 EMBL-EBI
WormBase CE11746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01758 Hypothetical protein K04G11.3 [Caenorhabditis elegans] ref|NP_510393.1| K04G11.3 [Caenorhabditis elegans] 0.0
blast CAB05205 Hypothetical protein F52G2.3 [Caenorhabditis elegans] ref|NP_502611.2| F52G2.3 [Caenorhabditis elegans] 1.0E-26
blast CAB05207 Hypothetical protein F52G2.2 [Caenorhabditis elegans] ref|NP_502610.1| RNAi Spreading Defective (see also sid) family member (rsd-2) [Caenorhabditis elegans] 4.0E-18
Sequence
Target Sequence 
>C. ELEGANS:182451_AT
aaagcacagcggatacttctgaattttggcagaaactgttgcaatttgaagaaaaatcaa
ataaacaagtgaaaaaaccacaatgtgaaatatcaatggaaaatagacaagcggggaaca
atgaaatgacttctccagaaccgacttataaagaactatcaaatactgtaaaacttttac
aacaggagaacataaatttgaaaaactccgttcagaccaggaaggatcaattttctcagc
tgtatgcgcaaaaagaaagatatgaaagcaccaacgagattgaaataaatcgtcttaaaa
aatgtgtagaagaagaaattgaattaaatcgacagctgatagcagaaaatacgagactgg
caacagaacaagtatctgttaaaagaaatatggaagcagcaagaagtgaactacaacgtt
ctgaagaaaaattaaataatgcaaaacgtgaattcagcatgttatacgaaaaagtttcgc
aatatgcaaaagacgtgtctgataaggaagcaattttacctgatgctggccagaacaatg
cagaagatattgagatacaaaagtttatcaattttgttgttcaccaagcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCACAGCGGATACTTCTGAATT 675 123 491 Antisense
GGGGAACAATGAAATGACTTCTCCA 703 497 603 Antisense
GACTTCTCCAGAACCGACTTATAAA 294 371 618 Antisense
GAAAAACTCCGTTCAGACCAGGAAG 430 299 690 Antisense
GATCAATTTTCTCAGCTGTATGCGC 153 423 715 Antisense
GATATGAAAGCACCAACGAGATTGA 379 425 749 Antisense
GCAAAACGTGAATTCAGCATGTTAT 618 317 931 Antisense
AAGACGTGTCTGATAAGGAAGCAAT 13 153 980 Antisense
GCAATTTTACCTGATGCTGGCCAGA 380 323 1000 Antisense
GATGCTGGCCAGAACAATGCAGAAG 410 413 1012 Antisense
CAATTTTGTTGTTCACCAAGCGGAA 639 179 1059 Antisense
Sequence Source Affymetrix Proprietary Database