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[182450_at]

Description EGAP2.1 /REP_DB=WormBase Gene ID /WP=CE04323 /TR=Q19075 /GB=AAA83592.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 71      6grp_total > 34      4grp_total > 04      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 332.9
(-1)
P 		288.1
(-3)
P 		302.2
(-2.4)
P 		422.7
(3)
P 		135
B 281.7
(-2.6)
P 		270.2
(-2.9)
P 		266.1
(-3)
P 		476.7
(3)
P 		211
C 365.4
(3)
P 		262.1
(-3)
P 		340.4
(1.5)
P 		349.2
(2.1)
P 		103
avr 326.7
(-0.8) 		273.5
(-3) 		302.9
(-1.8) 		416.2
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 299.9
(-0.3)
P 		406.5
(3)
P 		366.1
(1.8)
P 		358.3
(1.5)
P 		210.3
(-3)
P 		243.8
(-2)
P 		196
B 358.6
(0.8)
P 		416.2
(2.9)
P 		418.5
(3)
P 		283.9
(-1.9)
P 		252.8
(-3)
P 		297.9
(-1.4)
P 		166
C 349.1
(2.7)
P 		355.4
(3)
P 		317.2
(1.2)
P 		294.5
(0.1)
P 		229.3
(-3)
P 		321.3
(1.4)
P 		126
avr 335.9
(0.9) 		392.7
(3) 		367.3
(2.1) 		312.2
(0) 		230.8
(-3) 		287.7
(-0.9) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 121.2
(3)
P 		62.5
(-2.9)
P 		79
(-1.3)
P 		61.9
(-3)
P 		59
B 89.8
(1.2)
P 		66.7
(-2.2)
P 		61.7
(-3)
P 		101.6
(3)
P 		40
C 120.9
(3)
P 		75.4
(-1.4)
P 		118.6
(2.8)
P 		58.9
(-3)
P 		62
avr 110.6
(3) 		68.2
(-3) 		86.4
(-0.4) 		74.1
(-2.2) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 55.3
(-3)
P 		144.6
(3)
P 		79.7
(-1.4)
P 		90.9
(-0.6)
P 		63.5
(-2.4)
P 		59.4
(-2.7)
P 		89
B 124.8
(1.7)
P 		138.5
(3)
P 		101.6
(-0.5)
P 		75.2
(-3)
P 		102.7
(-0.4)
P 		111.1
(0.4)
P 		63
C 129.4
(3)
P 		108.5
(1.2)
P 		80.7
(-1.2)
P 		59.2
(-3)
P 		74.2
(-1.7)
P 		107.6
(1.1)
P 		70
avr 103.2
(0) 		130.5
(3) 		87.3
(-1.7) 		75.1
(-3) 		80.1
(-2.5) 		92.7
(-1.1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5937
Sequence Type Exemplar sequence
Representative Public ID EGAP2.1 NCBI
Target Description EGAP2.1 /REP_DB=WormBase Gene ID /WP=CE04323 /TR=Q19075 /GB=AAA83592.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062581 NCBI Caenorhabditis elegans EGAP2.1 (EGAP2.1) mRNA, complete cds. 11/11 None
SNAP00000035697 ENSEMBL cdna:SNAP chromosome:CEL140:II:5231408:5233137:1 10/11 None
GENEFINDER00000035699 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5231408:5233137:1 11/11 None
EGAP2.1 ENSEMBL cdna:known chromosome:CEL140:II:5231400:5233180:1 gene:EGAP2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5231405-5233135(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl EGAP2.1
Entrez Gene 173895 Entrez gene
SwissProt Q19075 EMBL-EBI
WormBase CE35268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83592 Hypothetical protein EGAP2.1 [Caenorhabditis elegans] ref|NP_494982.3| EGAP2.1 [Caenorhabditis elegans] 0.0
blast CAE59069 Hypothetical protein CBG02355 [Caenorhabditis briggsae] 1.0E-105
blast CAE59069 Hypothetical protein CBG02355 [Caenorhabditis briggsae] 1.0E-92
Sequence
Target Sequence 
>C. ELEGANS:182450_AT
aactgttccacaagtcacatggccaatgagctcaaattatcaacgcatacagtgaatgaa
actcggaaagttgtctatgatctgacagataaaatcgcatcaaagtatcccagaattgga
caaaatcagggaatggtgtacatagaagtgattcgaattgagccaaaaaaggcaaacgac
ttcatgtacaccattttggcaggtcaagaagcaaactccaacaactgtttcgctgttgtg
atgtctgatgagatgccaagtacaattgaaaaagttaaaatggaaaaagtcaattcacat
tcatcagtttcaatgatcaagactgttaatgaaaatttcaccgcttatgcaagtcaaagc
gcaacattcttcgacgagtcaaaagtctattcaaacccaagtgatatgttcttcacaaat
cttcgcaaaaatcatccggaaagtgcactcaattctgagcaagcattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGTTCCACAAGTCACATGGCCA 313 141 301 Antisense
AAATCGCATCAAAGTATCCCAGAAT 495 117 392 Antisense
GGCAAACGACTTCATGTACACCATT 435 535 471 Antisense
GGCAGGTCAAGAAGCAAACTCCAAC 18 535 498 Antisense
ACTGTTTCGCTGTTGTGATGTCTGA 657 97 524 Antisense
GTCAATTCACATTCATCAGTTTCAA 43 463 589 Antisense
GAAAATTTCACCGCTTATGCAAGTC 9 353 631 Antisense
AAAGCGCAACATTCTTCGACGAGTC 264 125 656 Antisense
TGTTCTTCACAAATCTTCGCAAAAA 213 563 707 Antisense
AAATCATCCGGAAAGTGCACTCAAT 455 117 729 Antisense
ACTCAATTCTGAGCAAGCATTCCAA 263 101 747 Antisense
Sequence Source Affymetrix Proprietary Database