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[182449_s_at]

Description C44C8.3 /REP_DB=WormBase Gene ID /WP=CE17542 /TR=Q9TW90 /GB=AAC68940.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 16.7
(-1.3)
A 		32.8
(0.6)
A 		1.7
(-3)
A 		54.1
(3)
A 		52
B 24.4
(-3)
A 		27.3
(-0.1)
A 		29.4
(2.1)
A 		30.3
(3)
A 		6
C 25.1
(-2.9)
A 		38.1
(-1.1)
A 		24.2
(-3)
A 		68.7
(3)
P 		45
avr 22.1
(-2.3) 		32.7
(-0.4) 		18.4
(-3) 		51
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 30.7
(-1)
A 		16.8
(-3)
A 		22.1
(-2.2)
A 		42.1
(0.6)
A 		21.8
(-2.3)
A 		58.4
(3)
P 		42
B 4.5
(-3)
A 		17.3
(-1.5)
A 		12.1
(-2.1)
A 		17.6
(-1.5)
A 		56.4
(3)
P 		45.2
(1.7)
P 		52
C 2.3
(-3)
A 		19.7
(-1.5)
P 		25.8
(-1)
A 		34.6
(-0.2)
A 		3.4
(-2.9)
A 		71.4
(3)
P 		69
avr 12.5
(-3) 		17.9
(-2.3) 		20
(-2) 		31.4
(-0.5) 		27.2
(-1.1) 		58.3
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.1
(1.6)
A 		7.1
(2.4)
A 		0.4
(-3)
A 		7.9
(3)
A 		8
B 7.8
(3)
A 		6.7
(-2.1)
A 		6.8
(-1.6)
A 		6.5
(-3)
A 		1
C 8.3
(-3)
A 		11
(1.9)
A 		8.4
(-2.8)
A 		11.6
(3)
P 		3
avr 7.4
(0.8) 		8.3
(2.3) 		5.2
(-3) 		8.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.7
(-2.4)
A 		6
(-2.2)
A 		4.8
(-3)
A 		10.7
(0.8)
A 		6.6
(-1.9)
A 		14.2
(3)
P 		9
B 1.6
(-3)
A 		5.7
(-1.8)
A 		2.9
(-2.6)
A 		4.7
(-2.1)
A 		22.9
(3)
P 		16.9
(1.3)
P 		21
C 0.8
(-3)
A 		6
(-1.6)
P 		6.6
(-1.5)
A 		7
(-1.4)
A 		1.1
(-2.9)
A 		23.9
(3)
P 		23
avr 2.7
(-3) 		5.9
(-1.8) 		4.8
(-2.2) 		7.5
(-1.2) 		10.2
(-0.1) 		18.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182449_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10918
Sequence Type Exemplar sequence
Representative Public ID C44C8.3 NCBI
Target Description C44C8.3 /REP_DB=WormBase Gene ID /WP=CE17542 /TR=Q9TW90 /GB=AAC68940.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067611(11), NM_067608(11), NM_067607(11), NM_067606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067611 NCBI Caenorhabditis elegans F58H7.7 (F58H7.7) mRNA, complete cds. 11/11 A 
NM_067608 NCBI Caenorhabditis elegans C44C8.2 (C44C8.2) mRNA, complete cds. 11/11 A 
NM_067607 NCBI Caenorhabditis elegans C44C8.3 (C44C8.3) mRNA, complete cds. 11/11 A 
NM_067606 NCBI Caenorhabditis elegans C44C8.4 (C44C8.4) mRNA, complete cds. 11/11 A 
SNAP00000021737 ENSEMBL cdna:SNAP chromosome:CEL140:IV:892806:894586:1 11/11 None
SNAP00000021740 ENSEMBL cdna:SNAP chromosome:CEL140:IV:896958:898739:1 11/11 None
SNAP00000021744 ENSEMBL cdna:SNAP chromosome:CEL140:IV:901110:902891:1 11/11 None
SNAP00000022279 ENSEMBL cdna:SNAP chromosome:CEL140:IV:909415:912360:1 11/11 None
C44C8.4 ENSEMBL cdna:known chromosome:CEL140:IV:891239:894586:1 gene:C44C8.4 11/11 A 
C44C8.3 ENSEMBL cdna:known chromosome:CEL140:IV:895391:898739:1 gene:C44C8.3 11/11 A 
C44C8.2 ENSEMBL cdna:known chromosome:CEL140:IV:899543:902891:1 gene:C44C8.2 11/11 A 
F58H7.7 ENSEMBL cdna:known chromosome:CEL140:IV:909415:913147:1 gene:F58H7.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021756 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021758 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021759 7/11 Cross Hyb Matching Probes None
SNAP00000022277 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022291 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022294 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:895396-898745(+) 100.0 100.0
chrIV:899548-902897(+) 100.0 100.0
chrIV:907853-911202(+) 100.0 100.0
chrIV:891244-894592(+) 99.92 99.92
chrIV:903701-907050(+) 99.84 99.84
Public Domain and Genome References
Gene Title



Ensembl C44C8.4
C44C8.3
C44C8.2
F58H7.7
Entrez Gene 183448 Entrez gene
183449 Entrez gene
183450 Entrez gene
186554 Entrez gene
SwissProt Q9TW90 EMBL-EBI
Q9TZ17 EMBL-EBI
O45093 EMBL-EBI
WormBase CE17542 Wormbase
CE17542 Wormbase
CE17543 Wormbase
CE34326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02596 Hypothetical protein F58H7.7 [Caenorhabditis elegans] ref|NP_500012.2| F58H7.7 [Caenorhabditis elegans] 0.0
blast AAC68942 Hypothetical protein C44C8.4 [Caenorhabditis elegans] ref|NP_500007.1| C44C8.4 [Caenorhabditis elegans] 0.0
blast AAC68940 Hypothetical protein C44C8.3 [Caenorhabditis elegans] gb|AAC68941.1| Hypothetical protein C44C8.2 [Caenorhabditis elegans] ref|NP_500008.1| C44C8.3 [Caenorhabditis elegans] ref|NP_500009.1| C44C8.2 [Caenorhabditis elegans] 0.0
blast AAC68939 Hypothetical protein C44C8.1 [Caenorhabditis elegans] ref|NP_500010.1| C44C8.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Sequence
Target Sequence 
>C. ELEGANS:182449_S_AT
gatgagctttctattgattgtcgacctgtactacgaaccccggcaagtttgaagtttcaa
atccataacttgcaattatcgtgtatggataataatcaactctttgaggcgattaaacca
atactggacttttccacacccctgagctctattactctccagtttggccatcagatcaat
tttgaggatctaattatccgatccacggaaattatgtactttgaaggctactttttactt
ctagataaagacctggacaacttgaatgagctccgtcacaaacgagtccatttatctatc
aaaccttattcccgatggcacaatgtctcacggctaatagacaatcggattgaggttgga
cgagaagctggtttttattattcgcttgaaatgaataaaaaaagcagagcaagggagatt
ttggagacagtaatgattaatcataaagagaggattattgagagaccaaacgaggatcca
aacagcgttccacttcgtatgaaaaattccttgggccttcatatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCTTTCTATTGATTGTCGAC 132 411 1885 Antisense
GATTGTCGACCTGTACTACGAACCC 448 433 1900 Antisense
GTTTCAAATCCATAACTTGCAATTA 525 445 1938 Antisense
ATTACTCTCCAGTTTGGCCATCAGA 293 13 2035 Antisense
GGACAACTTGAATGAGCTCCGTCAC 239 527 2139 Antisense
CGAGTCCATTTATCTATCAAACCTT 77 251 2167 Antisense
TATCAAACCTTATTCCCGATGGCAC 384 659 2181 Antisense
CCGATGGCACAATGTCTCACGGCTA 118 265 2196 Antisense
GAGACCAAACGAGGATCCAAACAGC 641 393 2346 Antisense
CCAAACAGCGTTCCACTTCGTATGA 643 275 2362 Antisense
AAAATTCCTTGGGCCTTCATATCAG 611 133 2387 Antisense
Sequence Source Affymetrix Proprietary Database